Smel028669.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Stenurella melanura
Gene Symbol
-
Assembly
GCA_963583905.1
Location
OY757311.1:82888825-82891335[+]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 2.6e-09 5.4e-07 31.5 0.0 2 35 17 50 16 57 0.92

Sequence Information

Coding Sequence
atgccTAAAGTAAGGAAGTCTGCTACGAAATATCAAAAAAAGTATAACGAAGACGATATTGTGTTAGCATTGCAAGCTATAAAGGATGGAATGTCTAAAAAGAAGGCTTCTGTCCAGTTTGGTGTGCCCCGCAGCACGCTACAATTTAGAATTTCtgataaatttacaaaaacaagTCATGGACCGGCAACAGTATTAACAAATGAAGAAGAAACACTTTTGGTTAATTGGATATTGGAAAGTCAAAGAAAAGGATTTCCGAAGAGGAAAGATGATATCCAAGCATCAGTTAAGATTTTTCTTGATAAGACAAATAGacaaacaatatttaaagataatttacctGGAGATAGGTGGTACAAATCATTTTTACGACGTCATCCAAGTATAAGGGAAAGAACACCGGAAGGAGTAACCCAAAGTAGTGCATGCATTTCCAGCAAAGATTTATTAAAATGGTTCGATGACATTGAACTTTACCTGAAAGAGAAAggatattttaccattttaaatgATCCTAAAAGAATTTATAATGGCGATgaaacttgttttttatttaatccgAAGGATGGAAAGGTGCTGGCTCCTAAAGGATGCAAAAACGTGTATGAGGTTGACCGAGGCTCTGCAAAGTCCAATTTAACTGTGATGTTTACTTTCTCCGCTGCAGGTGATGTTACCCCGCCAATGATTATCTACCCATATAAGAGACTACCACAAAGTATTGCGGAATCCGTTCCTAAAACTTGGGGAATTGGTATAAGTGATAATGGGTGGATGAAGTCGGAACTATTTTACGAGTACGTGGCTAACGTTCTCCATCCTCATCTTGTGAAATCTGACGTGCAGTTtccaataatttattttgttgatgGTCATAAGACACATCTAACATACCAATTAAGTGAACTATGTACCAATctaaaaatcattttgattgcATTATACCCTAACTCTACAAGGCTTCTTCAACCAGCAGACGTTGCTGCTTTTAAACCTATAAAAAATTGTTGGAAGCGTAGTATTTTGGCATGGAGAAGAGAAGAGCCCATTGCACAACTCACAAGAGATAAGTTTGCACCTATATTGAAAAAGGTTGTGGACTTAATTAAacctgaaaatttaataaatggaTTTCGTTCCTGTGGCCTTTATCCGTGGAAGCCTTCAGCTGTTGATTTATCGAAGTGTTTGGGAAAAGAAAAAAACCTACAAGATATTAACGAAGTCGAAAATACCTTTTTAACATACGAGTCTTTTTGTGATATTGTTGGTGAAGACAAAATACTTCAATTAAAGAACGCCAAATCAAATAGGTTTGAAGACAaagaaaatgatattttattgaaactaTGGACAACGTTTAACACAAATAACGTTGATATCGATTCTGATAGTATGAACCAACCTCATTTAACAAACAACGACAATACTCTAGATCCCAAAAATGTCCTCACGTCAACGTTTACAGATGATATACAAGCAAAAAATATATCAGATAGATCAGAGTCGAAAAAAGATAAATCAATAAATGCAGAATTATATGATCATCCTAACATGGAACCCAACAATGGAACTGAAATATCACATGATAAATCTGTGTCTTATGAATATACTAGATTAATTTCTGGAATTACTTTAGAAACCCAACACAGTAGTCCTACATTTTCATGCAACTTATCTGACATCCCTATTATAGTTCTTAATGGCAATACAAGTGAAACGTTAACGTCAGAACAGGAACTTAACAGTAACGTAATAATAGAAGAGATATACGGAAATGATAGAGATATAGAAAATGACAAATCAAACTTACTATTAGATAACAATAATTCTACTTCTAGAAATTTAGAGGATTTCTTGGTATGGCCTGAAACGCCAcaacgaaaaaataaaaaaaatgttgaacgaTTACCATATGTAATTACTTCAAGTGGATGGAAAAAAATTCAAGATGAAAAAAGAGCTGCAAAAGCGAAAAAAGAagaagagaaagaaaataaacgaAAGGAACgactaaaaaagaaagaaaatgaaGTTATTAGCAAagcaaaaaacaaacaaaaagttcaaaaaaaaatagtggaaaagaaaaagaatgttggagtgaaaatattatcaaatattGCAATCAATGCTATAGAAGAGACCAAAAGTAGTTTGACTAGAAAAGAAAGACATGTGAGAAATATTGCTGCTGAAGATGATGCAAGATACTCTAGTGTTATCCAGAATTTCTCTAGAATTGACTATGCCAAAGAAACTGCTGCATGTGAAATTGAAATACCTGAAATAGAGACcccttctttaaatttaaatgtctCATCTACTGACGATAATGTTCTTGTGACATCCGGTTTATGTTTTATCTGCACAAATAATGTCAATTGTGTGAATATAGGTATTAAGTGTTCTTATTGTAAAAGACAATACCACAagatttgtttacaaaaaaacaaactatatgcaaaaaaatttatatgtaaaACTTGTTCGAAAGCTTTTTCATag
Protein Sequence
MPKVRKSATKYQKKYNEDDIVLALQAIKDGMSKKKASVQFGVPRSTLQFRISDKFTKTSHGPATVLTNEEETLLVNWILESQRKGFPKRKDDIQASVKIFLDKTNRQTIFKDNLPGDRWYKSFLRRHPSIRERTPEGVTQSSACISSKDLLKWFDDIELYLKEKGYFTILNDPKRIYNGDETCFLFNPKDGKVLAPKGCKNVYEVDRGSAKSNLTVMFTFSAAGDVTPPMIIYPYKRLPQSIAESVPKTWGIGISDNGWMKSELFYEYVANVLHPHLVKSDVQFPIIYFVDGHKTHLTYQLSELCTNLKIILIALYPNSTRLLQPADVAAFKPIKNCWKRSILAWRREEPIAQLTRDKFAPILKKVVDLIKPENLINGFRSCGLYPWKPSAVDLSKCLGKEKNLQDINEVENTFLTYESFCDIVGEDKILQLKNAKSNRFEDKENDILLKLWTTFNTNNVDIDSDSMNQPHLTNNDNTLDPKNVLTSTFTDDIQAKNISDRSESKKDKSINAELYDHPNMEPNNGTEISHDKSVSYEYTRLISGITLETQHSSPTFSCNLSDIPIIVLNGNTSETLTSEQELNSNVIIEEIYGNDRDIENDKSNLLLDNNNSTSRNLEDFLVWPETPQRKNKKNVERLPYVITSSGWKKIQDEKRAAKAKKEEEKENKRKERLKKKENEVISKAKNKQKVQKKIVEKKKNVGVKILSNIAINAIEETKSSLTRKERHVRNIAAEDDARYSSVIQNFSRIDYAKETAACEIEIPEIETPSLNLNVSSTDDNVLVTSGLCFICTNNVNCVNIGIKCSYCKRQYHKICLQKNKLYAKKFICKTCSKAFS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01369103; iTF_01369104; iTF_01369105; iTF_01369106; iTF_01369113; iTF_01369114; iTF_01369117;
90% Identity
iTF_01369117;
80% Identity
iTF_01369104; iTF_01369105; iTF_01369106; iTF_01369114;