Sbip006577.1
Basic Information
- Insect
- Stenoptilia bipunctidactyla
- Gene Symbol
- Zfx
- Assembly
- GCA_944452705.1
- Location
- CALYCB010000125.1:3299-12836[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.00076 0.11 14.3 0.1 3 21 182 200 181 201 0.96 2 19 5.6 7.9e+02 2.1 0.2 3 23 234 254 232 257 0.59 3 19 0.0008 0.11 14.2 0.1 2 23 261 282 260 282 0.95 4 19 0.18 26 6.8 4.1 1 21 285 305 285 306 0.92 5 19 0.00017 0.024 16.3 0.2 1 23 320 343 320 343 0.92 6 19 0.00012 0.016 16.9 0.9 1 23 349 371 349 371 0.98 7 19 1.7 2.3e+02 3.8 0.2 1 23 378 400 378 400 0.94 8 19 0.26 36 6.3 1.4 1 23 406 429 406 429 0.97 9 19 0.39 55 5.8 0.4 1 16 437 452 437 453 0.90 10 19 0.00026 0.036 15.8 0.0 1 21 551 571 551 571 0.95 11 19 1.2 1.6e+02 4.3 0.1 3 23 579 600 577 600 0.95 12 19 0.0049 0.68 11.8 0.8 1 23 605 628 605 628 0.97 13 19 1.2e-06 0.00016 23.2 0.3 2 23 634 655 633 655 0.97 14 19 0.072 10 8.1 2.8 2 20 659 677 659 679 0.93 15 19 2.4e-06 0.00034 22.2 0.4 1 23 705 728 705 728 0.95 16 19 0.0061 0.86 11.5 0.2 1 23 734 756 734 756 0.93 17 19 0.027 3.8 9.4 0.1 1 23 762 784 762 784 0.97 18 19 0.0081 1.1 11.1 0.3 1 23 790 813 790 813 0.93 19 19 0.0072 1 11.2 0.2 2 23 820 842 819 842 0.96
Sequence Information
- Coding Sequence
- ATGACAAACTTCTCCGACAATGTTTCATTTGACGATTACATCACAGACCTATATTTATTGATCGACGAAAATGGAAATAATACTTTAATTAAAAACAATGACATGATTTCTGGCAAACCTTTAACCACTCATAAAAAGAACTTGAAAGATCACTCAAGAAAGTTGGACGAAGAAAATGGGATTTACGGGAACCTAACGTCGTTTCAGGTGGAGGAAAACGACCCCTTCCCGTCTGGAGTGTGCAACGATTGTGTCATGGACGTGCTATCTGCTATGCGCTTCAAAGAACTGTGCGCTCTGTCTGTCCATCACTGGAGACACGCTACTACTTCACTTCTATCCTGTTTAAACCTTCCAAGAGACCCAAAGAAGAGATATTACCTTTTCTATAGAGAAGACTCGATAACAGTCAAATCTGAAGATAAAAGAAATACCAATAATCAAATAGAAGAACCTAGAATTGGTTTAAATAGGAATACTTACAAGAACAAGCTAATTATGGACACAAAGACCCGTCGCGGCAAATTACCGAAAAAGCGCCTATGTCCGGACTGTGGGAAAGAGTTTTTTGATGTACACGAACTAAACGTTCATTTGAAAGATACATTCAAGTGTGCATGCGTGTATTGTGCTGAAATACTCTCTAGGAACGACATAGCGAATCATTTGAATCTATCGCACAATAAGCGAGTCTATTTATGTGGAGTTTGTTACAAATTACTCCCGTCTGACATATCTTACAAAAGCCACTTGGAGAAACATAGGTCTTCCTCGCAGGTGTACTGCAGCGTATGTGGCAAGGGTTTCATTAATGAAGCCTCTTTGGCTATGCATAAGAACGACCATAGTCCGTTTCACTGTTCCAACTGTAATATAAGTTTCGAAAACGAAAAATGTTTGAGATATCACAGCCAAACATGTAAAGCGGATGGAAAAACCGAGCATTCGAAATCGGCTTTCATATGCGGCGATTGCGGACGTTCTTACAATAAGAAGCCATCTCTTCGTATTCATATAGTACAGAAGCATTTGAACGTGCTACCATACGTTTGTGTCACATGTGGCAAGAGGACCTCCACTCTTGCGCATCTAAAGTCTCACGAAGCGACGCACGCTGCAGACAGACAAGTCTTCGATTGTAAGCTATGCGGCGCTCGTTTGCAAACAGAGCTTGGTTTTCTTCTCCATAAACGAATACACACGGGCGAGAAACCGTTCGAATGCGAGCAGTGCCTCAAGAGATATCTGTCCAAATCGCGGTTACTTGATCACGTGAAGAGGACTCATTTAAACGCTAAGGATATACCGTATAAGTGTGATCAATGTCCAGCGAGGTTCATTCACGAGGAGGCTTTGTGCCCCGACGGCGCCTGCGTGGACTGCGTGTCGACAGCTGTAGCCGCTAATGAATTCAGGATATTCGTGCGAAACTCGCAAGCTATTTGGACCAAATCAGTCGCATCTTTACAGACCACGCCTCGACAGGAAGGAACCATGAAAGCCCTCGGAATCATCTTCAAGAGAGATACACTTACCATTCAAACTGTTAAAGATTATATTGGTGATAAACCCCTACAAATCATTAACAGGCTTAAAGAACGAGTCAAAAAAAAGCCACCCAAAAAACGAAGAATAACGAAAAATGGCTCTTTCGTCTGCGGAGATTGTGAAAAGGCCTTCACGAGTCCTGTTCTATTAGCGCAACATTTAAATTGCAGCGCACAGAAGGACGCTTGTCTGACATGCGGCCAAGTGTTGTTTAGAGGAAAAGATATGAAAGAACATTTGACTACTGTCCATAATCAAAAAGTCTATCATTGCAACGACTGCACAAGTTTATTTAAGAATCTAGAAGAGCTGGATGAGCACATGAAAATCGCGCACGCCAAAGGTGCCCTCACTTGTGGAGACTGCGGCCGGACGTTCAAACGCAGCGGCACACTAGAAGCGCACACTCAGATGCACGCAGTACGGACCTGCCGATCTTGCGGCAAACAGTTCACTAACCGAGGTTGCTATAGAGAACACAGGTCTCAATGCGAGCCTGAGGCCAGACCTGATGTTAGATCGATGTCCAAAGACCGACGCTGCAACGTGCGAGACCCAGCTAGCTTCACCTGTGACTATTGCGGGAAAACCTACAATTCTCGTCCGCAGTTGAAGAATCACATCATCTGGATACACATGAACATTCGGCCGTACGAGTGCCAGTGGTGCAGAAAACGGTTCTACACTCCCGGTCGACTCGCTGAACACAGCGTCGTACACACGCGCGTCCGGAACTTCGCCTGCGACATTTGCGGAATGAAGCTGGTGTCTAAAATGGCGGTTGTCTACCACAGGCGCCGTCACACTGGCGAGAAACCTTACGCGTGTGAGGATTGCGGAGAAAGGTTCATTTCGGCGTCGCGAAGGTCCGAACATGCAAAGAGGAAGCATAAAAAGGGCAACCTGGTCCAATGCTTGCAATGTCCTGATAGCTTCGCACGAGGGACTGATCTTAGGAAACATATGGAAAAGGTACATAGCAGACGGCCAGCTGTGCTGCGAACTGAATTAAAGATTGAAAGTGTGTCTACGTAG
- Protein Sequence
- MTNFSDNVSFDDYITDLYLLIDENGNNTLIKNNDMISGKPLTTHKKNLKDHSRKLDEENGIYGNLTSFQVEENDPFPSGVCNDCVMDVLSAMRFKELCALSVHHWRHATTSLLSCLNLPRDPKKRYYLFYREDSITVKSEDKRNTNNQIEEPRIGLNRNTYKNKLIMDTKTRRGKLPKKRLCPDCGKEFFDVHELNVHLKDTFKCACVYCAEILSRNDIANHLNLSHNKRVYLCGVCYKLLPSDISYKSHLEKHRSSSQVYCSVCGKGFINEASLAMHKNDHSPFHCSNCNISFENEKCLRYHSQTCKADGKTEHSKSAFICGDCGRSYNKKPSLRIHIVQKHLNVLPYVCVTCGKRTSTLAHLKSHEATHAADRQVFDCKLCGARLQTELGFLLHKRIHTGEKPFECEQCLKRYLSKSRLLDHVKRTHLNAKDIPYKCDQCPARFIHEEALCPDGACVDCVSTAVAANEFRIFVRNSQAIWTKSVASLQTTPRQEGTMKALGIIFKRDTLTIQTVKDYIGDKPLQIINRLKERVKKKPPKKRRITKNGSFVCGDCEKAFTSPVLLAQHLNCSAQKDACLTCGQVLFRGKDMKEHLTTVHNQKVYHCNDCTSLFKNLEELDEHMKIAHAKGALTCGDCGRTFKRSGTLEAHTQMHAVRTCRSCGKQFTNRGCYREHRSQCEPEARPDVRSMSKDRRCNVRDPASFTCDYCGKTYNSRPQLKNHIIWIHMNIRPYECQWCRKRFYTPGRLAEHSVVHTRVRNFACDICGMKLVSKMAVVYHRRRHTGEKPYACEDCGERFISASRRSEHAKRKHKKGNLVQCLQCPDSFARGTDLRKHMEKVHSRRPAVLRTELKIESVST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01368392;
- 90% Identity
- iTF_01368392;
- 80% Identity
- -