Sbip003913.1
Basic Information
- Insect
- Stenoptilia bipunctidactyla
- Gene Symbol
- Zfx
- Assembly
- GCA_944452705.1
- Location
- CALYCB010000065.1:5702-12863[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.00078 0.11 14.3 0.1 3 21 199 217 198 218 0.96 2 19 5.8 8.1e+02 2.1 0.2 3 23 251 271 249 274 0.59 3 19 0.00082 0.11 14.2 0.1 2 23 278 299 277 299 0.95 4 19 0.19 26 6.8 4.1 1 21 302 322 302 323 0.92 5 19 0.00017 0.024 16.3 0.2 1 23 337 360 337 360 0.92 6 19 0.00012 0.017 16.8 0.9 1 23 366 388 366 388 0.98 7 19 1.7 2.4e+02 3.8 0.2 1 23 395 417 395 417 0.94 8 19 0.26 37 6.3 1.4 1 23 423 446 423 446 0.97 9 19 0.4 56 5.7 0.4 1 16 454 469 454 470 0.90 10 19 0.00026 0.037 15.8 0.0 1 21 568 588 568 588 0.95 11 19 1.2 1.7e+02 4.3 0.1 3 23 596 617 594 617 0.95 12 19 0.005 0.7 11.7 0.8 1 23 622 645 622 645 0.97 13 19 1.2e-06 0.00016 23.1 0.3 2 23 651 672 650 672 0.97 14 19 0.074 10 8.1 2.8 2 20 676 694 676 696 0.93 15 19 2.5e-06 0.00035 22.1 0.4 1 23 722 745 722 745 0.95 16 19 0.0063 0.88 11.4 0.2 1 23 751 773 751 773 0.93 17 19 0.028 3.9 9.4 0.1 1 23 779 801 779 801 0.97 18 19 0.0083 1.2 11.0 0.3 1 23 807 830 807 830 0.93 19 19 0.0074 1 11.2 0.2 2 23 837 859 836 859 0.96
Sequence Information
- Coding Sequence
- ATGGCTGCTCGCTCCTTTGTCGATTTTGTTAAAGACTCCGAAAAAATCTGGGTTCGCATGACAAACTTCTCCGACAATGTTTCATTTGACGATTACATCACAGACCTATATTTATTGATCGACGAAAATGGATATAATACTTTAATTAAAAACAATGACATGATTTCTGGTAAAACCACTCATAAAAAAAACTTGAAAGATCACTCAAGAAAGTTGGACGAAGAAAATGGGATTTACGGGAACCTAACGTCGTTTCAGGTGGAGGAAAACGACCCCTTCCCGTCTGGAGTGTGCAACGATTGTGTCATGGACGTGCTATCTGCTATGCGCTTCAAAGAACTGTGCGCTCTGTCTGTCCATCACTGGAGACACGCTACTACTTCACTTCTATCCTGTTTAAACCTTCCAAGAGACCCAAAGAAGAGATATTACCTTTTCTATAGAGAAGACTCGATAACAGTCAAATCTGAAGATAAAAGAAATACCAATAATCAAATAGAAGAACCTAGACTTGGTTTAAATAGGAATACTTACAAGAACAAGCTAATTATGGACACAAAGACCCGTCGCGCCAAATTACCGAAAAAGCGCCTATGTCCGGACTGTGGGAAAGAGTTTTTTGATGTACACGAACTAAACGTTCATTTGAAAGATACATTCAAGTGTGCATGCGTGTATTGTGCTGAAATACTCTCTAGGAACGACATAGCGAATCATTTGAATCTATCGCACAATAAGCGAGTCTATTTATGTGGAGTTTGTTACAAATTACTCCCGTCTGACATATCTTACAAAAGCCACTTGGAGAAACATAGGTCTTCCTCGCAGGTGTACTGCAGCGTATGTGGCAAGGGTTTCATTAATGAAGCCTCTTTGGCTATGCATAAGAACGACCATAGTCCGTTTCACTGTTCCAACTGTAATATAAGTTTCGAAAACGAAAAATGTTTGAGATATCACAGCCAAACATGTAAAGCGGATGGAAAAACCGAGCATTCGAAATCGGCTTTCATATGCGGCGATTGCGGACGTTCTTACAATAAGAAGCCATCTCTTCGTATTCATATAGTACAGAAGCATTTGAACGTGCTACCATACGTTTGTGTCACATGTGGCAAGAGGACCTCCACTCTTGCGCATCTAAAGTCTCACGAAGCGACGCACGCTGCAGACAGACAAGTCTTCGATTGTAAGCTATGCGGCGCTCGTTTGCAAACGGAGCTTGGTTTTCTTCTCCATAAAAGAATACACACGGGCGAGAAACCGTTCGAATGCGAGCAGTGCCTCAAGAGATATCTCTCCAAATCGCGGTTACTTGATCACGTGAAGAGGACTCATTTAAACGCTAAGGATATACCGTATAAGTGTGATCAATGTCCAGCGAGGTTCATTCACGAGGAGGCTTTGTGCCCCGACGGCGCCTGCGTGGACTGCGTGTCGACAGCTGTAGCCGCTAATGAATTCCGGATATTCGTGCGAAACTCGCAAGCTATTTGGACCAAATCAGTCGCATCTTTACAGACCACGCCTCGACAGGAAGGAACCATGAAAGCCCTCGGAATCATCTTCAAGAGAGATACACTTACCATTCAAACTGTTAAAGACTATATTGGTGATAAACCCCTACAAATCATTAACAGGCTTAAAGAACGAGTCAAAAAAAAGCCTCCTAAAAAACGAAGAATAACGAAAAATGGCTCTTTCGTCTGCGGAGATTGTGAAAAGGCCTTCACGAGTCCTGTTCTATTAGCGCAACATTTAAATTGCAGCGCACAGAAGGACGCTTGTCTGACATGCGGCCAAGTGTTATTTAGAGGAAAAGATATGAAAGAACATTTGACTACTGTCCATAATCAAAAAGTCTATCATTGCAACGACTGCACAAGTTTATTTAAGAATCTAGAAGAGCTGGATGAGCACATGAAAATCGCGCACGCCAAAGGTGCTCTCACTTGCGGAGACTGCGGCCGGACGTTCAAACGCAGCGGCACACTAGAAGCGCACACTCAGATGCACGCAGTGCGGACCTGCCGATCTTGCGGCAAACAGTTCACTAACCGAGGTTGCTATAGAGAACACAGGTCTCAATGCGAGCCTGAGGCCAGACCTGATGTTAGATCGATGTCCAAAGACCGACGCTGCAACGTGCGAGACCCAGCTAGCTTCACCTGTGACTATTGTGGGAAAACCTACAATTCTCGTCCGCAGTTGAAGAATCACATCATCTGGATACACATGAACATTCGGCCGTACGAGTGCCAGTGGTGCAGAAAACGGTTCTACACTCCCGGTCGACTCGCTGAACACAGCGTCGTACACACGCGCGTCCGGAACTTCGCCTGCGACATTTGCGGAATGAAGCTGGTGTCTAAAATGGCGGTTGTCTACCACAGGCGCCGTCACACTGGCGAGAAACCTTACGCGTGTGAGGATTGCGGAGAAAGGTTCATTTCGGCGTCGCGAAGGTCCGAACATGCAAAGAGGAAGCATAAAAAGGGCAACCTGGTCCAATGCTTGCAATGTCCTGATAGCTTCGCACGAGGGACTGATCTTAGGAAACATATGGAAAAGGTACATAGCAGACGGCCAGCTGTGCTGCGAACTGAATTGAAGATTGAAAGTGTGTCTACGTAG
- Protein Sequence
- MAARSFVDFVKDSEKIWVRMTNFSDNVSFDDYITDLYLLIDENGYNTLIKNNDMISGKTTHKKNLKDHSRKLDEENGIYGNLTSFQVEENDPFPSGVCNDCVMDVLSAMRFKELCALSVHHWRHATTSLLSCLNLPRDPKKRYYLFYREDSITVKSEDKRNTNNQIEEPRLGLNRNTYKNKLIMDTKTRRAKLPKKRLCPDCGKEFFDVHELNVHLKDTFKCACVYCAEILSRNDIANHLNLSHNKRVYLCGVCYKLLPSDISYKSHLEKHRSSSQVYCSVCGKGFINEASLAMHKNDHSPFHCSNCNISFENEKCLRYHSQTCKADGKTEHSKSAFICGDCGRSYNKKPSLRIHIVQKHLNVLPYVCVTCGKRTSTLAHLKSHEATHAADRQVFDCKLCGARLQTELGFLLHKRIHTGEKPFECEQCLKRYLSKSRLLDHVKRTHLNAKDIPYKCDQCPARFIHEEALCPDGACVDCVSTAVAANEFRIFVRNSQAIWTKSVASLQTTPRQEGTMKALGIIFKRDTLTIQTVKDYIGDKPLQIINRLKERVKKKPPKKRRITKNGSFVCGDCEKAFTSPVLLAQHLNCSAQKDACLTCGQVLFRGKDMKEHLTTVHNQKVYHCNDCTSLFKNLEELDEHMKIAHAKGALTCGDCGRTFKRSGTLEAHTQMHAVRTCRSCGKQFTNRGCYREHRSQCEPEARPDVRSMSKDRRCNVRDPASFTCDYCGKTYNSRPQLKNHIIWIHMNIRPYECQWCRKRFYTPGRLAEHSVVHTRVRNFACDICGMKLVSKMAVVYHRRRHTGEKPYACEDCGERFISASRRSEHAKRKHKKGNLVQCLQCPDSFARGTDLRKHMEKVHSRRPAVLRTELKIESVST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01368393;
- 90% Identity
- iTF_01368393;
- 80% Identity
- -