Sbip036929.1
Basic Information
- Insect
- Stenoptilia bipunctidactyla
- Gene Symbol
- lrrfip2
- Assembly
- GCA_944452705.1
- Location
- CALYCB010001155.1:285570-306119[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 9.6e-75 1.4e-70 239.2 23.8 1 266 13 266 13 289 0.90 2 6 2.5 3.8e+04 -5.1 4.3 15 44 299 322 276 370 0.50 3 6 0.56 8.4e+03 -3.0 0.6 7 69 345 418 340 428 0.59 4 6 3 4.5e+04 -9.2 7.1 18 29 461 473 435 515 0.51 5 6 2 3.1e+04 -4.8 2.5 7 69 490 563 485 573 0.59 6 6 3 4.5e+04 -5.7 3.8 18 27 606 616 575 661 0.53
Sequence Information
- Coding Sequence
- ATGAATAAAATTAAAGATTGCAACGTTCGTTTTCAGGCGGAGCAGCGTCTGGCGGCGCGGCGGGCGGCGCGGGCGGAGGCGCGCGAGATTCGAATGCGGGAGCTCGAGCGACAGCAGCGGGAACAGGAGGACCATGCCGACAAGGCCTATGACATGTATACAGAGACGGTGGGTCGGCGCACGTCGGTGGCGCCGCGGCTGGCGGTGCTGGGCGCGCACTCGCCGCGCCGCTGCTCTGAGGACTCGGGTGACGAGCCCCTGTCGCTCAAGGAGATGCGGCACGAGCTCAAAGAAGTGGAGGAGAAGTTCCGCAAGGCCATGATCGTGAACGCTCAGCTGGACAACGACAAGGCCTCGTTCCGCTACCAGCTCGAGCTGCTGCGGGACCGGATCGAGGAGCTGACGGAGGAATACGCGCAGCTACAGCGCGAGCATAAAGAGAAATGCTCCGCACACGAGCGTCTGAAGCGCGAGCACTTGTCCCTGGAGCGGGAACTAGACGCGGCCCGCGCCGCCGTGCTCGCGCGCGATGCCGCGGCGGCGGCGGCGGGCCGCGTGTTCGTCGCGGCGGAGCCCTCGGCGGAGGACCCCGCGGCGCCGTCGCTGGCCCTGGTCACGGCCGATGCGGAGCATGCCTTGAACGAATGTGGCCCGGGGACGCTAGATGTCCGATTGCAAACCCTATTGTCTTCGAAGCAAGCTCTAGAATCGGAAGTGCGCAAACTGAAGCTTCAGTTGAACGAGGAGCGAGCGGCGAAGCAAAATGGCGTCGCTAACCATGAATACGATGAGGAAGTGGAGCAGCTGCGCAAGGCGTGCGCGGAGGCGAAGGGGCGCCTCGCGCGCGCCGAGTCCGAGGCCGCGCTGGCCAGCGCCACGTCCGCGCGCCTCGCCGCGCAGCTCGCCCGCCAGCGCGCGCACGCCGCGCAGCAGGACGAGCACGAGGCCAGGCTGCAGCACGCGCGCCGCCAGCTGCAGCGGGAGGTATGTGTGCTGCACCATCACACGCGCGGCCAGCGCCACGTCCGCGCGCCTCGCCGCGCAGCTCGCCCGCCAGCGCGCGCACGCCGCGCAGCAGGACGAGCACGAGGCCAGGCTGCAGCACGCGCGCCGCCAGCTGCAGCGGGAGGTATGTGTGCTGCACCATCACACGCGCGGCCAGCGCCACGTCCGCGCGCCTCGCCGCGCAGCTCGCCCGCCAGCGCGCGCACGCCGCGCAGCAGGACGAGCACGAGGCCAGGCTGCAGCACGCGCGCCGCCAGCTGCAGCGGGAGGTATGTGTGCTGCACCATCACACGCGCGGCCAGCGCCACGTCCGCGCGCCTCGCCGCGCAGCTCGCCCGCCAGCGCGCGCACGCCGCGCAGCAGGACGAGCACGAGGCCAGGCTGCAGCACGCGCGCCGCCAGCTGCAGCGGGAGGTATGTGTGCTGCACCATCACACGCGCGGCCAGCGCCACGTCCGCGCGCCTCGCCGCGCAGCTCGCCCGCCAGCGCGCGCACGCCGCGCAGCAGGACGAGCACGAGGCCAGGCTGCAGCACGCGCGCCGCCAGCTGCAGCGGGAGGTATGTGTGCTGCACCATCACACGCGCGGCCAGCGCCACGTCCGCGCGCCTCGCCGCGCAGCTCGCCCGCCAGCGCGCGCACGCCGCGCAGCAGGACGAGCACGAGGCCAGGCTGCAGCACGCGCGCCGCCAGCTGCAGCGGGAGGTATGTGTGCTGCACCATCACACGCGCGGCCAGCGCCACGTCCGCGCGCCTCGCCGCGCAGCTCGCCCGCCAGCGCGCGCACGCCGCGCAGCAGGACGAGCACGAGGCCAGGCTGCAGCACGCGCGCCGCCAGCTGCAGCGGGAGGTATGTGTGCTGCACCATCACACGCGCGGCCAGCGCCACGTCCGCGCGCCTCGCCGCGCAGCTCGCCCGCCAGCGCGCGCACGCCGCGCAGCAGGACGAGCACGAGGCCAGGCTGCAGCACGCGCGCCGCCAGCTGCAGCGGGAGGTATGTGTGCTGCACCATCACACGCGCGCGGAGCCGAGGCAGCGGCTTGTACAGAGAGGTATATGCACCTGTCTCACTCACATCGTGTAATAGCAGAACAAAGATACGTTGCAACACGCTCGGATGCAGTTGACAAACAAAAGTGTGTATTGCTGTCTTCATGTCTTCTTCAAGACGAGAACGAGGCCAGGTTACAACACGCTCGCAGGTAG
- Protein Sequence
- MNKIKDCNVRFQAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYTETVGRRTSVAPRLAVLGAHSPRRCSEDSGDEPLSLKEMRHELKEVEEKFRKAMIVNAQLDNDKASFRYQLELLRDRIEELTEEYAQLQREHKEKCSAHERLKREHLSLERELDAARAAVLARDAAAAAAGRVFVAAEPSAEDPAAPSLALVTADAEHALNECGPGTLDVRLQTLLSSKQALESEVRKLKLQLNEERAAKQNGVANHEYDEEVEQLRKACAEAKGRLARAESEAALASATSARLAAQLARQRAHAAQQDEHEARLQHARRQLQREVCVLHHHTRGQRHVRAPRRAARPPARARRAAGRARGQAAARAPPAAAGGMCAAPSHARPAPRPRASPRSSPASARTPRSRTSTRPGCSTRAASCSGRYVCCTITRAASATSARLAAQLARQRAHAAQQDEHEARLQHARRQLQREVCVLHHHTRGQRHVRAPRRAARPPARARRAAGRARGQAAARAPPAAAGGMCAAPSHARPAPRPRASPRSSPASARTPRSRTSTRPGCSTRAASCSGRYVCCTITRAASATSARLAAQLARQRAHAAQQDEHEARLQHARRQLQREVCVLHHHTRGQRHVRAPRRAARPPARARRAAGRARGQAAARAPPAAAGGMCAAPSHARGAEAAACTERYMHLSHSHRVIAEQRYVATRSDAVDKQKCVLLSSCLLQDENEARLQHARR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -