Sbip029220.1
Basic Information
- Insect
- Stenoptilia bipunctidactyla
- Gene Symbol
- -
- Assembly
- GCA_944452705.1
- Location
- CALYCB010000986.1:92457-92918[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.4e-08 3.8e-06 27.8 0.0 3 37 17 51 15 57 0.93 2 2 2.6 4.1e+02 2.1 0.0 22 30 142 150 126 151 0.75
Sequence Information
- Coding Sequence
- ATGTCTGGAAAGTACCAGAGAACCACTCTTCGAGCATCGTGGAGTGCAGACAATTTAGATAAGGCGATGCGATGTGTTCTAAGTAAAGAAATGGGTGTAAACGAGGCATCCAGAAACTTTGCCATACCCTCACGGACCCTGAGAAGGTACCTATTATCGGGACAATCGAAAGGTCCTTTAGGACGAAAACCAGTGTTTTCTGCTGAACATGAAAAAAAACTGGTTGCCCATATAAAAAAATTGGAAAAAGTTGGATTTGCCCCTGATCGCAAAGACATTAAAGAAATGGCTTTTCAATTAGCCAAGAAACTCAAAATTAAAAATCCATTTTCATCAACTTCGGAGTCAGCCGGAAATGTGTGGTTTTCGGGATTCATGACTCGGAATACAGAATTAAGCCAAAGAAAATCAGAAGGTCTATCACTTGCTCGAGCTTATGGCGTTAATAGAAAAGATGTTTAA
- Protein Sequence
- MSGKYQRTTLRASWSADNLDKAMRCVLSKEMGVNEASRNFAIPSRTLRRYLLSGQSKGPLGRKPVFSAEHEKKLVAHIKKLEKVGFAPDRKDIKEMAFQLAKKLKIKNPFSSTSESAGNVWFSGFMTRNTELSQRKSEGLSLARAYGVNRKDV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00038673; iTF_00373863; iTF_01076365; iTF_00745623;
- 90% Identity
- -
- 80% Identity
- -