Alyc026709.1
Basic Information
- Insect
- Agrochola lychnidis
- Gene Symbol
- -
- Assembly
- GCA_963680765.1
- Location
- OY796863.1:19342090-19342485[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.3e-08 1.9e-05 25.7 0.0 10 37 2 29 1 35 0.92 2 2 0.77 3.4e+02 2.5 0.1 22 30 120 128 103 129 0.72
Sequence Information
- Coding Sequence
- ATGCATAGTGTAGTAAGCAAAGTAATGGGTGTTAATGAGGCATCCAGAACCTTTGGCATACCGTCTCGAACCCTAAGAAGACATATTTTATCAGGAAAATCAAAGGGCCCTCTAGGACGCAAACCAGTATTTTCAGGTGAATACGAAAAGAAACTGGTTGCCCATATAAAGAAATTGGGAAAAGTTGGATTTGCCCCTGACAGAAAAGACGTAAAAGAAATGGCATTTCAACTAGCTAAGAAACTCAATATTAAAAACGCATTTTCAGCAAGTTCAGAATCAGCTGGAAATGTATGGTTTTCGGGATTCATGGCTCGCAACTCAGAATTAAGTCAAAGAAAATCAGAAGGCTTATCACTTGCTAGAGCTTATGGAGTTAATAGAAAAGATGTATAG
- Protein Sequence
- MHSVVSKVMGVNEASRTFGIPSRTLRRHILSGKSKGPLGRKPVFSGEYEKKLVAHIKKLGKVGFAPDRKDVKEMAFQLAKKLNIKNAFSASSESAGNVWFSGFMARNSELSQRKSEGLSLARAYGVNRKDV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01367699;
- 90% Identity
- iTF_00373863;
- 80% Identity
- -