Stie011862.1
Basic Information
- Insect
- Stenopsyche tienmushanensis
- Gene Symbol
- -
- Assembly
- GCA_008973525.1
- Location
- Contig149:825314-830493[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 6.3e-05 0.47 10.4 0.2 16 44 419 448 416 464 0.76 2 4 0.0075 55 3.7 0.0 26 48 488 510 478 517 0.88 3 4 0.085 6.3e+02 0.3 0.2 21 48 540 566 536 567 0.81 4 4 6.9e-07 0.0051 16.6 0.9 15 48 562 595 555 601 0.90
Sequence Information
- Coding Sequence
- ATGAATTTAGTTCAGCACGGGATTGAGAAATCTGATGGTGGATTCACCGTTACTTTATTACCATTTACACAGTATAGTAATGTTGCACGAGGAAGCTCGTTACTCTTACATAATAACATTGTGGAACCAATTACGCTTAATTATCTTGAAGAACCACTCATAGCTGATAATGTCGTTAATGAAGCATATGTGGAGGCGCCTGTACCGACATTACAATTGGGTACCTTTGAAAACGAATCTTTAACATTAGCAAATGAAGCAATTAGAAATGGAGAAGAATTTTACACGGAAGAAGTCGTAGACGAGGTTCATCCGGTTTATGTAGACGCTTACATAAATAATCCTTTACAAAATTTAGTAGCACTTGAAACAATTGATAATTATATCCAAAACGAAGTAATAATAGATAATAATGACGTAAATAGTGCTGTGGATCTTTTATCTGATAATGAAAATAATTTATATTATATTGCTTTAAACGAAGCCAATAAAGATGAGACTGTCGACTATACAGAGGTAGAAAGTAACACCAATATCAATGAAACGCAAAGATTATTACATGGAAATGAAAATCAAACGACTCATTGGAATCAGAATGAGGCGTTAAATTTTAATCAAAATAATGAAATCAATTATGAAAATATCACAAAAATTTATGAAGCGTTTAAATGCAATAATTGTGATTATGCCACGCTAGATAAAAACGAATTAGTCGCTCATATTAAGGAATGTATTCTTAAAATGGACATGTTGGATTCTACTAAAGAAAAAGTTATGTTTATGTGTGGAAAGTGCTCCAATTTATTACCGTCTATTGATGCGTGCCGTCAACATATGATCGAAGAACATAATTTTCAAACTGTTGCAATGGACAATGAAAATTCCTTGGAGGAAAGTTCTAATAAAAACGAAACGCTTGACAATAAAAAAAATATTAATCAAGGTAAGTATAGTAAGAAAGATCAACTGGCTAAGAAAAAGGTGGAAGAATTTTGGTTGACTCCCAAAACCATCAATGAAGTGAAATTAAATCTACAGCATCCAAAAAATGTTAAATGCGCCCGCATATCTTGTTCGTATATGTTCAAATCTGTCCAAGCGATGACGACGCATTTTAATTGTCACGTAATAGAACCTACGCCAGTTACAAATACATACCAACGATCTCCGCAAAGAGAACCATCTCCGTTATATGCATGTACTTTTTGCGAATTAAGTTTTAAAAACTGGCCTAGTTGCTCGTTACATCTATGGCGCAAACATTCCATTTCTATAGACGTTATCACGTGCCCCGTGTGCTTTGCTGTTACGACTTATAGCGTTTCAAAAATGACTCAACATTTAGCTCGACATTGGCGCGGAAGGCAACAAGAAAACGATTGCGGGACATGTAAATCGAAAGTCACTCAAACGCCCAAGGACGACGTTATGACAAATCTGCCGCGTTGGTACTCTAAAATTCGCTGTGAAATTTGCACAAAGATGTTTTCCGATTCCAAGACTCTTAAAAAGCACGTACAAGCTGTTCATAAAAAAATAAAACCGTTCATTTGTAACGTATGCAATCACACATCCGCTAGTAAAAATATGATGCAGCTTCATATGCGTCAACACACTCGAGAGAAGCCATATGCTTGCGATTACTGCGAATATCGAACTGGTGATCATAACACATTGCGTCGACATCGTATGAGACACACTGGGGAGCGCCCCTATACATGCCCTTATTGCGAATACGTAAGTATACAAAGTATAGCATTGAAGCAACATCTGAAATCCATGCATCCCAACGAAGCGCCGCCTGCGTGTCCACACAAAAAGTCCATTCCTAAAGAATAG
- Protein Sequence
- MNLVQHGIEKSDGGFTVTLLPFTQYSNVARGSSLLLHNNIVEPITLNYLEEPLIADNVVNEAYVEAPVPTLQLGTFENESLTLANEAIRNGEEFYTEEVVDEVHPVYVDAYINNPLQNLVALETIDNYIQNEVIIDNNDVNSAVDLLSDNENNLYYIALNEANKDETVDYTEVESNTNINETQRLLHGNENQTTHWNQNEALNFNQNNEINYENITKIYEAFKCNNCDYATLDKNELVAHIKECILKMDMLDSTKEKVMFMCGKCSNLLPSIDACRQHMIEEHNFQTVAMDNENSLEESSNKNETLDNKKNINQGKYSKKDQLAKKKVEEFWLTPKTINEVKLNLQHPKNVKCARISCSYMFKSVQAMTTHFNCHVIEPTPVTNTYQRSPQREPSPLYACTFCELSFKNWPSCSLHLWRKHSISIDVITCPVCFAVTTYSVSKMTQHLARHWRGRQQENDCGTCKSKVTQTPKDDVMTNLPRWYSKIRCEICTKMFSDSKTLKKHVQAVHKKIKPFICNVCNHTSASKNMMQLHMRQHTREKPYACDYCEYRTGDHNTLRRHRMRHTGERPYTCPYCEYVSIQSIALKQHLKSMHPNEAPPACPHKKSIPKE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01367321;
- 90% Identity
- iTF_01367321;
- 80% Identity
- iTF_01367321;