Stie010101.1
Basic Information
- Insect
- Stenopsyche tienmushanensis
- Gene Symbol
- -
- Assembly
- GCA_008973525.1
- Location
- Contig065:39324-44440[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.12 9.2e+02 -0.2 0.0 14 46 207 241 196 249 0.73 2 4 0.00063 4.6 7.2 0.0 21 52 272 303 268 305 0.85 3 4 0.00059 4.3 7.3 0.1 23 48 302 326 299 329 0.90 4 4 8.2e-06 0.06 13.2 0.0 26 48 392 414 375 416 0.91
Sequence Information
- Coding Sequence
- ATGGAACAAAAAGTTTGTCGTCAGTGCCTACAAACTATCAACGACACCTATAACAGATTAATTCGTGATAGTTGCGGTCATTTTAAATGCAGATTATGTCTATTGCAAGAAACTACACAGTGTTCCGCTTGCGCATCGGCAAACTTAGACGAAAGCAACAAATCCCTCCCGGATGAAGCTCCGACAATTGACAATCAACTTGTAAATAGATCAATCAAAACCAAATATAAGATACATTCTCCAGTTGCCTCTAACGTAACTACGAGCATTAAAACTATCACCCGAAGCTATAATCATAGTACATCTCCTCTAAGATTTTATTCGCAAAGCATCCAAGAAAGTGCCAATTCTGATAAATCGACGCGTTATAGCCTGAGATTAAGCCGCAGAAAATCAACATCTAGAAATGTACCGGCAGACCTATCTATGAAACGCTCAAAAGATATCTCGCCCATCGATGATAATAACCATGAATCGTCGACGGCGTCTACCAGTAAACGGGATAAAATGAGAGCCACCAAAAAAGTGCACTTTGCAGAACTTTTAGAAGAGACACAGAAAGCAAACAATGTTAACAATTCAAATGGTGCTGAGCATACAAAACCTCAATTGGAAGACTCGAGTCGCTCAAGAAATCAAACATCAAATACTGACGAATATTTTTGTGATGCGTGCGAAGAAGTATTCGTTAAAAAATCCGTATTTTATCGACATTTAAAAATACATGCACCTTTAAAATGTTACGTTTGCGACATATGCGATAAAACCTTTTATAGTCGGTCCAAGTTAATAAGACACATCGGAATTCATGCCAGTATTAAGCCTTTCAAGTGTACCATTTGTGATGCAAAATTTAGTAATTCGTCGTCGCTGCGGAAACATGGACATATTCATTCTGGATTAAAACCGCATGTATGCAAAACATGTGGAATACCTTTTAGAGATTCTTCCAATTTGAGGAAGCACGAATTGAAGCATACGGGTATGTGTACTTGGCAAGCATTCACCTGCAATGAATGCGGAAAGAAATATAGGAAAAAGTGGTCTTTATTAATGCATGCAAAGAGTCACACGAAAGATATGACCTGGAAATGCTCCTTTTGCGCTCGGATGTTTTATACAAAAAAAGATAAAACCCGCCATGAAATTATTCATACAGCTGTAAAAAAGTTCAATTGTCCTATCTGCAAAGCAGTGTTTGGTAGAAAAGATAATTTGGAAAGACATTTACGTAATACACACGGCGAAGAAAGTCATAAGAATTTTAATGAAAATGAAATTTTATCAGACACTGTAAAGTGTGATAAAAATCTTACTACATCGGAAAAGAGAAACAATAGCAACGGGTGCTTATTACATTTTGAGGAGAAGTGTGATGATTCACAAAGGTCTGACGTAGAAAAACAATCATGTAATGATAAATTTCAGCAAGAAGTACAAGAGCATTGCGAAGTTGAAAAACAAACCAAAAAGTCTGAAGATATGTTATCCTCTGAAAATGAAACTAGAATGAAAATAATTGAGGCCAATAATAAAAGAAAATCGGTTATATTTAAATCAGCATGCACCGATAAGCAAAATAATACAGTGGCATATAAAAACGATGCCATTAAATTATCCCCGATCAAATCACGTGAGATTGATAATCAAAAAAATAGCTATGTGAATAAACCCAGTACGAGTTATGCAACTGTTGACTGTGTCGGAGAAAATCTGACGAATGCGAGTTCATTTATTCAACATCCCGTTAATCGTACTGATATGAGCAACGGAAAGAAACACAGAGAAATGGTCAGTGTAACTGATATGTACAACAGAATGCATGCTTCGGAAACGACTATAGAGATATTGAATAAAACAGAATATTCAGGTAGAAGTGAACAACCAACTGGTAATTCTTCCAAAAGCTTGCCGAGAAATAGCGAGGAATATATTCACAAAAAAGTCAACTATGGCCGTAAAAAGAATCTACAGAATCTTTCTACGCCACCGTCCTTATCCTCACAATATCAATATTCCGAGTTTGACGATACAAAAGCGAGCTGGTGTATTTATCATCTGTCATCTAAAAATAGCGAGATGAACGAGAAAACCATCTCTAAGAAACATTGCACGCCTGCTTCGATTGAGCTGTACAGGAAGATTTTGTTTCCGAGTTATAAAAGCGATCCGGAAAGTCCAGCAAATGACTATGAAAATTCTTGCGATTCTTCAGTAAATGCATTGCATGACAGTCAAAAGGCAACGAATTCCGAGAGCCAACTATCTACACAACAGTATATTTCCGATCATCAACAGTCGATGGCGAGTTCCAAGGAAACATTTCAACAAACGAATGCTTCTGCGCCACAATATCTAGTAGATCCGAGAGAAATTTTTCAATCCTCTACTAATCCTGTGTCAGAATATCTAGAAGATTCGAGTGAAGCCTTTCAATCTCCGACTCCTTCCGTGCAACAATATCTAGTAGATTCGAGAGAAGTCTTTCAATCGCCATCTCCTTCCGCGTCACAATACCGAGTAGATCCGAGAGAAGTTTTACAATCTCCGACACCATCACCGTCGCAATATCTGGTAAATTCGAGAGAAGTTGCGTCATATCCTTACGCATCGCAAGCGGAGATGTCGAATCATTCCAGAGACAATACGCAATATCCGTGTTTACCCATACAGCATTCACACACAAAGGATAACATTCAATATTCCGACTACACTGTACACCAGCTCTTAACAAATTCGAGACAAATCCCTCATCCGATTCTGCCGAGCCAAAAGACTGTCATGGATTCGAGGGATTCGATTCAAAAATTATTCTCCGGACAACATATCATGAGCTCGAAGGAGAACTTTCAACGACCGCCTCACGCGGCAGACCAAGCGCTCGCGAGCGCCAGGGAAAATTTCACCGCTCAAAGTCTACACTATCCTATGCAGATTTTACCCAAGTTGAGGGCAAACAATCAGGGCAGTCATTACGCCGACAAATTACCGCATTCGAGAGAGAATACCCCAAGCACAAGTTATACCCTGCAACAATTATTAATGAAATCGAAGGACAATTTTCAACTCCCGGGTTCTTCTAAATCGCAAAAAGATTCACTAGATTCCGCCTCTCAACCGAAAAGTAACAACACAAACGATTTGCATTGGAAGTTTAGACGACATGTACCGAAATCGAAAAAATAA
- Protein Sequence
- MEQKVCRQCLQTINDTYNRLIRDSCGHFKCRLCLLQETTQCSACASANLDESNKSLPDEAPTIDNQLVNRSIKTKYKIHSPVASNVTTSIKTITRSYNHSTSPLRFYSQSIQESANSDKSTRYSLRLSRRKSTSRNVPADLSMKRSKDISPIDDNNHESSTASTSKRDKMRATKKVHFAELLEETQKANNVNNSNGAEHTKPQLEDSSRSRNQTSNTDEYFCDACEEVFVKKSVFYRHLKIHAPLKCYVCDICDKTFYSRSKLIRHIGIHASIKPFKCTICDAKFSNSSSLRKHGHIHSGLKPHVCKTCGIPFRDSSNLRKHELKHTGMCTWQAFTCNECGKKYRKKWSLLMHAKSHTKDMTWKCSFCARMFYTKKDKTRHEIIHTAVKKFNCPICKAVFGRKDNLERHLRNTHGEESHKNFNENEILSDTVKCDKNLTTSEKRNNSNGCLLHFEEKCDDSQRSDVEKQSCNDKFQQEVQEHCEVEKQTKKSEDMLSSENETRMKIIEANNKRKSVIFKSACTDKQNNTVAYKNDAIKLSPIKSREIDNQKNSYVNKPSTSYATVDCVGENLTNASSFIQHPVNRTDMSNGKKHREMVSVTDMYNRMHASETTIEILNKTEYSGRSEQPTGNSSKSLPRNSEEYIHKKVNYGRKKNLQNLSTPPSLSSQYQYSEFDDTKASWCIYHLSSKNSEMNEKTISKKHCTPASIELYRKILFPSYKSDPESPANDYENSCDSSVNALHDSQKATNSESQLSTQQYISDHQQSMASSKETFQQTNASAPQYLVDPREIFQSSTNPVSEYLEDSSEAFQSPTPSVQQYLVDSREVFQSPSPSASQYRVDPREVLQSPTPSPSQYLVNSREVASYPYASQAEMSNHSRDNTQYPCLPIQHSHTKDNIQYSDYTVHQLLTNSRQIPHPILPSQKTVMDSRDSIQKLFSGQHIMSSKENFQRPPHAADQALASARENFTAQSLHYPMQILPKLRANNQGSHYADKLPHSRENTPSTSYTLQQLLMKSKDNFQLPGSSKSQKDSLDSASQPKSNNTNDLHWKFRRHVPKSKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01367190;
- 90% Identity
- iTF_01367190;
- 80% Identity
- iTF_01367190;