Stie008539.1
Basic Information
- Insect
- Stenopsyche tienmushanensis
- Gene Symbol
- lrrfip2
- Assembly
- GCA_008973525.1
- Location
- Contig123:174946-181338[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.1e-95 1.6e-91 306.5 18.7 1 300 39 339 39 339 0.91 2 3 0.0096 1.4e+02 1.3 4.1 120 171 337 388 336 392 0.91 3 3 0.26 3.8e+03 -3.4 7.1 14 236 378 411 359 414 0.47
Sequence Information
- Coding Sequence
- ATGGCGGATCCCGACGACGCGGACCTCGCCGACGACGAGGCCCCCGCGAGGGCCCCGCCCGACGGGAGCGAGGACGCCAGCATCGTCGGGATCCTGGGAAAGGACCACGACGAAGCGGAGGCGAGGCTGGCCGCGAGGCGCCAGGCGAGGGCGGAGGCCAGGGAGATCCGCATGAAGGAGATCGAGAGGCAGCAGAGGGAGCAGGAGGACAGCGCGGACCGAGCCTTCGACATGCACGCGGACGCCCACGTCCGGGGCCCCCGCGTCGCGGCCGTCGCGCCGGTCGCCGGCGTCGGCTGCAGGCCTCCCTCGGCGGCGACGACCGACTCCCGCCGCTCCTCGAGGAGGAGCTCCGAGGACTCGCCGGAGGAGACGGGCGGCTTCAGAGACGCGAAGTGCGAGCTCAAGGAGGCGGAGGAGAAGTTCCGAAAGGCCATGATTTTGAACGCTCAGTTGGACAACGACAAAGCTTCCTTCTCATATCAGCTCGAATTGCTCAAGGACAGATTGGAAGATCTCCAAGAGCAACATACGCAACTGCAGCGCGAGCACAGGGACAAGTGTCGGGCCTGCGACAGTCTGGCGCGCGACTGCAGAGCCACGAAGGAGGAGCTGGAGAGGTGCACGGCGGCCCTGGTCCTGCGCGACCGCTGCATCCGGGAGGCCGGGCTGGAACTCGTCTCCGCGGAGGGAGCGGACGGGGACGGACCCGGCGCCGCCCTCGTCTCTCGCTCCGGCCGGGAGGCCCTCGAAGCCGCCGGACGGGGGACGCTAGATGTGCGATTGCAGACCCTCTGCTCGGAACGGCAGGCGCTGACTGCCGAAGTTCGTCAGCTGAAATCTCAGCTGGAAGAGGAGAGAGCGAAGAAGAAGAGCGCGTCGCACGGTTCGTCACGCAACGGCCCGACGAACGCTTCGGACAGCGACTCAGATTCGTTCGATCACCACAGAGAAACTTCAAAATTGGTTGCAGACTATAAATTCAGAGCTTCCAAAGCCGAACAGGACGTTTTGACTTTACAAGCGACAGTCGCTAGACTGGAGAGCCAAGTAATTCGATACAAAAGTGCCATGGAGCAGTCTGAAAAAGTAGAGGACGAATTGAAATGCGATCGGAGAAAACTGCAAAGAGAAGCCAGGGAAGCACAGAGCAGAGTTGAAGAATTGGAAACGGAAAATAGTCATTTAAATAAACGTCTAGACAAGTTGAAGAATGCCAAATCAACTTTATTAAAAGAACTTTGA
- Protein Sequence
- MADPDDADLADDEAPARAPPDGSEDASIVGILGKDHDEAEARLAARRQARAEAREIRMKEIERQQREQEDSADRAFDMHADAHVRGPRVAAVAPVAGVGCRPPSAATTDSRRSSRRSSEDSPEETGGFRDAKCELKEAEEKFRKAMILNAQLDNDKASFSYQLELLKDRLEDLQEQHTQLQREHRDKCRACDSLARDCRATKEELERCTAALVLRDRCIREAGLELVSAEGADGDGPGAALVSRSGREALEAAGRGTLDVRLQTLCSERQALTAEVRQLKSQLEEERAKKKSASHGSSRNGPTNASDSDSDSFDHHRETSKLVADYKFRASKAEQDVLTLQATVARLESQVIRYKSAMEQSEKVEDELKCDRRKLQREAREAQSRVEELETENSHLNKRLDKLKNAKSTLLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -