Scau003278.1
Basic Information
- Insect
- Stenodera caucasica
- Gene Symbol
- -
- Assembly
- GCA_037414795.1
- Location
- JAZBGZ010000255.1:800-1701[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 0.025 1.8e+02 2.0 0.0 26 37 117 128 106 138 0.74 2 5 0.034 2.5e+02 1.6 0.0 22 45 156 179 148 186 0.82 3 5 0.00038 2.8 7.9 0.1 22 46 184 208 177 210 0.88 4 5 1.9e-05 0.13 12.1 0.2 21 52 211 242 207 242 0.88 5 5 0.00088 6.4 6.7 0.0 21 48 239 266 237 268 0.90
Sequence Information
- Coding Sequence
- ATGGATAATCATCATGATGCCGAATTTCATCGGATGCTCGAGCCTGATGTTACAATAAAAGATATAGATAGTGAGGAAGACAGTATGGATACTCAGAAATCTTCATTCATGGTACAAACGATTGATGGAAATACATCTCCTGTAAGGCCTGACATATCAATAATACCGGTTAATGAGAAAAAGCCGCACATTAAAATAAGACTGTTCAAAAAAGAGTACTCACCGAGTAAAGAAGATGGTAAGAAGGTAAAAAGTAGATCACCGCGTACACAAGTACGATTAGTATCGAAAGATGAAATTGAACGTACTATTGATACTTATCAACGTCGTAAATCTTTACCATTAGAAAAATGTCCAATATGTAAAAAGTTTTTTCGTCGAATGAAGACCCATTTATTGAAACACGAACAAcagcagcagcaacaacaacaacaacaaaaacaatccatAAATCACAACACTATAAATGATCCATTAACATGTAATTATTGTATGAAAACCTTCAATACACAAAGTAACTTATTAATACATATGCGTACTCATACAGGTGATAAACCGTATGTATGTGATATATGTCAGAAAGGTTTTGCACAATCATGTAATTTAGTTAATCATATGAGAATTCATACAGGTGAACGTCCATTTAAATGTCCACATTGTGAACGGGCATTCACACAATctggtaatttgaataatcataTACGTTTACATACAGATGAGAAACCATTCAAATGTCATTTTTGTGACAAAGCATTTGTACAATCTGGTAATCTTAATTCgcatattaaaaataatcataaatatgtAAATGAATATGATAATCAAACATTAGATGGTTTTAAATGCTAG
- Protein Sequence
- MDNHHDAEFHRMLEPDVTIKDIDSEEDSMDTQKSSFMVQTIDGNTSPVRPDISIIPVNEKKPHIKIRLFKKEYSPSKEDGKKVKSRSPRTQVRLVSKDEIERTIDTYQRRKSLPLEKCPICKKFFRRMKTHLLKHEQQQQQQQQQQKQSINHNTINDPLTCNYCMKTFNTQSNLLIHMRTHTGDKPYVCDICQKGFAQSCNLVNHMRIHTGERPFKCPHCERAFTQSGNLNNHIRLHTDEKPFKCHFCDKAFVQSGNLNSHIKNNHKYVNEYDNQTLDGFKC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00842160;
- 90% Identity
- iTF_01366585;
- 80% Identity
- iTF_01366585;