Basic Information

Insect: Stenodera caucasica
Gene Symbol: L
Assembly: GCA_037414795.1
Location: JAZBGZ010000007.1:107049-115364[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.0084 0.5 10.6 3.4 1 23 79 101 79 101 0.99

2 18 0.06 3.6 8.0 5.8 1 23 107 129 107 129 0.97

3 18 3.2e-06 0.00019 21.4 3.2 1 23 135 157 135 157 0.99

4 18 0.00014 0.0082 16.3 0.3 1 23 163 185 163 185 0.99

5 18 8.8e-05 0.0052 16.9 1.4 1 23 207 230 207 230 0.95

6 18 0.016 0.93 9.8 0.1 2 23 257 279 256 279 0.95

7 18 0.0014 0.083 13.1 0.3 1 23 310 333 310 333 0.97

8 18 0.0073 0.43 10.8 0.0 3 23 438 458 437 458 0.97

9 18 0.0088 0.52 10.6 4.9 3 23 468 488 466 489 0.89

10 18 0.0011 0.064 13.5 0.4 1 23 494 517 494 517 0.94

11 18 0.0006 0.036 14.2 2.2 1 23 581 604 581 604 0.95

12 18 0.011 0.66 10.3 0.8 1 23 642 665 642 665 0.94

13 18 0.00022 0.013 15.6 2.6 2 23 677 698 676 698 0.97

14 18 0.0014 0.084 13.1 0.6 1 23 707 729 707 729 0.98

15 18 7 4.1e+02 1.5 0.7 3 13 806 816 804 818 0.86

16 18 0.0029 0.17 12.1 0.3 2 23 885 906 884 906 0.95

17 18 0.059 3.5 8.0 0.6 1 20 914 933 914 936 0.95

18 18 0.018 1.1 9.6 1.6 1 23 943 965 943 965 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.0084	0.5	10.6	3.4	1	23	79	101	79	101	0.99
2	18	0.06	3.6	8.0	5.8	1	23	107	129	107	129	0.97
3	18	3.2e-06	0.00019	21.4	3.2	1	23	135	157	135	157	0.99
4	18	0.00014	0.0082	16.3	0.3	1	23	163	185	163	185	0.99
5	18	8.8e-05	0.0052	16.9	1.4	1	23	207	230	207	230	0.95
6	18	0.016	0.93	9.8	0.1	2	23	257	279	256	279	0.95
7	18	0.0014	0.083	13.1	0.3	1	23	310	333	310	333	0.97
8	18	0.0073	0.43	10.8	0.0	3	23	438	458	437	458	0.97
9	18	0.0088	0.52	10.6	4.9	3	23	468	488	466	489	0.89
10	18	0.0011	0.064	13.5	0.4	1	23	494	517	494	517	0.94
11	18	0.0006	0.036	14.2	2.2	1	23	581	604	581	604	0.95
12	18	0.011	0.66	10.3	0.8	1	23	642	665	642	665	0.94
13	18	0.00022	0.013	15.6	2.6	2	23	677	698	676	698	0.97
14	18	0.0014	0.084	13.1	0.6	1	23	707	729	707	729	0.98
15	18	7	4.1e+02	1.5	0.7	3	13	806	816	804	818	0.86
16	18	0.0029	0.17	12.1	0.3	2	23	885	906	884	906	0.95
17	18	0.059	3.5	8.0	0.6	1	20	914	933	914	936	0.95
18	18	0.018	1.1	9.6	1.6	1	23	943	965	943	965	0.97

Sequence Information

Coding Sequence: atgaaaatgttCTTCAAAGGTAATAGTAGTCGATTAGAGTcgttaattgagaaaattcaatcatcgCGTGAAGATTTCAAAATACCAGGTAATATATCGAGATTTGTTTCAGTGGCCGAAGAAGAAACAGCCGGCAGTTCAGGTTCGGGTGGTTCAGCGGAAACATTACAGGGTTTCGATGATCTCATTAATTCTGAAGAGccaaaaagtgatcaagaacGAAAAATTGGACCATACAAATGTACTGTATGCGgttcgaattattttaaagaGAAACATCTTAGGGAGCACGAACAGACTCATACTGATCATCTTCAATTCACTTGTTCCTACTGCCCGCGACTTTTTAAACATAAACGTTCCAGAGACCGACACACCAAACTTCATACCGGcgacaaaaaatataaatgtcAACAATGTGAATCAGCCTTTTCTAGaagCGACCATTTGAAAATACACATGAAAACTCACGACAGTCGAAAACCTTACAAATGTGGCACGTGCAATAGGGGTTACAATACAGCGGCGGCCCTTTCCTCCCATCAACAAAGCCATTTAAAACAAGAATCAAGATCCGGAAGTCGGACAAGTGGAGGAAGTACCCCAAGTCCTGGACTTTTCCGGTGTAATCACTGTACGGAAACATTCGGCAAAGCTGATTTATTGCAGACACATATGACATTGGTACATAGTGATACGGATTCGACATTGAGTCAAACACCAGAACCAAATTCCGAATATCAAGGACAAATTGAAGATTTGAAAATAGTTTGTATGTATTGTTCGAAAGAATTTCCAAGTTTGGATTTAATGTACCAACATACGAATATAGCCCATAGAGATGTACCAAATGGTTCTACATCACTACAATCACCAAGTCAAAATTCaccaaaacaacaagaaatttaCCAAAATGGCAGTCCAACATATGCTTGTGATCGTTGTACAATGCAATTTGATTCCGtacaaaatttaaaagatCATATCAATACCGTCCATTGGCGACCAACAATATCACcaaatccaattaattatGGTACATCATTAATAGATAAAcaatattcacaatttcaaACACAACCGACCGATTTGAGtcgtaaaaagaaaaaagatgaaatcaatgataaaccaacaatatcgaaaaaaacaaaaaaagacaatttaTCGTCACCAAATACATTGAGTCCATATGATACAAATGATAAACCATGTATATGTTCCTGTTGTTATGCCCAATTGCCaaattttaaaagttttttAAATCATATGGAAACGCACGTTATATCAacgaataattcattattggGTTTTTGTCCTGTTTGTGGTGAACCAGGACGCGATCCTGTTAGTTTCACAAATCATATATTTAGCCATGCTATTGCTCAAGTACCTGGACGTTGCTGTTATGCTTGTAAAAAATCATTTGAACGTTCCgatgaattacaaaaacatCTATTCGATCATCATGTTATATCCGTTTTTAAATGTTCGATTTGTAACGAAATATTCGACACCAAAATATCGATGCAGttacATTTAGCAAATAAACATAGTGATGAATGTAAACATTTTAAATGTTATTTATGTACAAATCAAGTATTCCATGATCAACTATCCGCAGAATTACATATATCAATGAAacattataatcaattcaCACCATGTATAGGAACAAGTCAATTGATAAGGCCACAATATCAGATCGAATTGGATGCAAGATTACGTGATTATGGATTCATATATCAATgtacattttgtcaaaaaaccTTCAAAGATCaatattcacaatatattCATATTGTTAAGGAGCATAGTGAAAATAAAGAagTTGATAAATTTATGGATCAAAATCCGTCCAGATCACCAAATTTCTTTCCGAAAACACACCAATCACctgataaaaaattagaaacaattgataattataaatgtgaTATATGTAATCGTAATGATTTTAGTACAGAAAGTGATTTAATATCGCATAAGAAACTGCATAATATTAAATGTAAAATTGGTCCAGTTAGTCTTCAATGTGCATATTGTAACGAATATTGTAAATCACGTAATGATTTAGAAAATCACATGAAAACACATCAAGTGAATAGTAATAAAGGCAAACATAAATGTAATATTTGCGATGAAATATTTGCATCAACATTAACATTAGCCGATCATAAATTAACGCATTGTAAAATAGTTGAAGGCAACAATTGTGTTCAATGTAAATCTATATTAACTGATGAACAATCGTTTTATAATCACCAATATCAACATAGCAATATACCGACTAAATCTAATGCACAAATATCATTGCCGGCTAATTGTATTATATGTTGTCAAACGTTACAGACAGATGTTGAAGTTAAATTACATGCTAAATTCCATTTGAaacatttattacaaaaagaaTGTTTATGCGGTGTTTGCAATAAAGTCTACGATAGTCAAACTGGTCAAATACTaacaaattatgataaaacaaCAGATGGTTTAACtgttattttatgtaaaaattgcaatacaacaaatgatgataaaaatttaacaattaataataaatttgattgtgtACAACGGGTACAAACATTCGATAGTGAAAACGATATCCAAAATCATGCTGCAATACATATGATTGATGATGGTGCAAATCTCGAATGTCGTCTATGTAAACAAGTGTTCACATCACAATTAAAACTCCAAATACATCTAATCGAACATAATTTTTATGGTATGAATCAATATAGTTGTTATGTATGTTCATCTGTATTTACAGCAGCTAGTGGTTTACAAAGTCATATCATTTGTCATGGTTTAGATAGTCGACCTTATGAATGTAATCAATGTCAAATGAAATTCTTCTTTAGGGCCGAATTGGACAATCATCGATTCGTACATATGTCAAAACAACTATATATTAAcggtattgataataaaagtcaacaatataaattatgtaaatattgtaGAAATACGTATTTagataattcattttatttagaaCATTTGAATCAGTGCCCTTTCAAATTGAATCCAAAAAAAGAATATGATACCGGCGATAttgacaataatattaaacaagAGTTAAACGATATCACATTGGATATAAATAACGATAAAGATGAGCAATAA
Protein Sequence: MKMFFKGNSSRLESLIEKIQSSREDFKIPGNISRFVSVAEEETAGSSGSGGSAETLQGFDDLINSEEPKSDQERKIGPYKCTVCGSNYFKEKHLREHEQTHTDHLQFTCSYCPRLFKHKRSRDRHTKLHTGDKKYKCQQCESAFSRSDHLKIHMKTHDSRKPYKCGTCNRGYNTAAALSSHQQSHLKQESRSGSRTSGGSTPSPGLFRCNHCTETFGKADLLQTHMTLVHSDTDSTLSQTPEPNSEYQGQIEDLKIVCMYCSKEFPSLDLMYQHTNIAHRDVPNGSTSLQSPSQNSPKQQEIYQNGSPTYACDRCTMQFDSVQNLKDHINTVHWRPTISPNPINYGTSLIDKQYSQFQTQPTDLSRKKKKDEINDKPTISKKTKKDNLSSPNTLSPYDTNDKPCICSCCYAQLPNFKSFLNHMETHVISTNNSLLGFCPVCGEPGRDPVSFTNHIFSHAIAQVPGRCCYACKKSFERSDELQKHLFDHHVISVFKCSICNEIFDTKISMQLHLANKHSDECKHFKCYLCTNQVFHDQLSAELHISMKHYNQFTPCIGTSQLIRPQYQIELDARLRDYGFIYQCTFCQKTFKDQYSQYIHIVKEHSENKEVDKFMDQNPSRSPNFFPKTHQSPDKKLETIDNYKCDICNRNDFSTESDLISHKKLHNIKCKIGPVSLQCAYCNEYCKSRNDLENHMKTHQVNSNKGKHKCNICDEIFASTLTLADHKLTHCKIVEGNNCVQCKSILTDEQSFYNHQYQHSNIPTKSNAQISLPANCIICCQTLQTDVEVKLHAKFHLKHLLQKECLCGVCNKVYDSQTGQILTNYDKTTDGLTVILCKNCNTTNDDKNLTINNKFDCVQRVQTFDSENDIQNHAAIHMIDDGANLECRLCKQVFTSQLKLQIHLIEHNFYGMNQYSCYVCSSVFTAASGLQSHIICHGLDSRPYECNQCQMKFFFRAELDNHRFVHMSKQLYINGIDNKSQQYKLCKYCRNTYLDNSFYLEHLNQCPFKLNPKKEYDTGDIDNNIKQELNDITLDINNDKDEQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00842108;
90% Identity: iTF_00842108;
80% Identity: -