Basic Information

Insect: Stenodera caucasica
Gene Symbol: su(Hw)
Assembly: GCA_037414795.1
Location: JAZBGZ010000880.1:19731-22164[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.01 0.61 10.4 2.5 1 23 175 198 175 198 0.93

2 13 0.13 7.6 6.9 1.8 1 19 229 247 229 252 0.91

3 13 3.9e-06 0.00023 21.1 0.9 1 23 258 280 258 280 0.99

4 13 0.00012 0.0072 16.4 0.6 2 20 287 305 286 307 0.94

5 13 1.7e-05 0.001 19.1 1.6 1 23 318 340 318 340 0.95

6 13 2.2e-05 0.0013 18.8 1.3 1 23 350 372 350 372 0.99

7 13 3.5e-06 0.00021 21.3 0.3 1 23 378 400 378 400 0.98

8 13 1.5e-06 8.8e-05 22.5 0.7 1 23 406 428 406 428 0.99

9 13 9.4e-06 0.00056 19.9 3.5 1 23 434 456 434 456 0.95

10 13 4.6e-05 0.0027 17.8 3.4 1 23 462 485 462 485 0.97

11 13 0.00063 0.037 14.2 2.6 2 20 492 510 491 513 0.93

12 13 6.4e-06 0.00038 20.5 0.5 1 23 519 541 519 541 0.97

13 13 2e-05 0.0012 18.9 3.3 2 23 548 570 547 570 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.01	0.61	10.4	2.5	1	23	175	198	175	198	0.93
2	13	0.13	7.6	6.9	1.8	1	19	229	247	229	252	0.91
3	13	3.9e-06	0.00023	21.1	0.9	1	23	258	280	258	280	0.99
4	13	0.00012	0.0072	16.4	0.6	2	20	287	305	286	307	0.94
5	13	1.7e-05	0.001	19.1	1.6	1	23	318	340	318	340	0.95
6	13	2.2e-05	0.0013	18.8	1.3	1	23	350	372	350	372	0.99
7	13	3.5e-06	0.00021	21.3	0.3	1	23	378	400	378	400	0.98
8	13	1.5e-06	8.8e-05	22.5	0.7	1	23	406	428	406	428	0.99
9	13	9.4e-06	0.00056	19.9	3.5	1	23	434	456	434	456	0.95
10	13	4.6e-05	0.0027	17.8	3.4	1	23	462	485	462	485	0.97
11	13	0.00063	0.037	14.2	2.6	2	20	492	510	491	513	0.93
12	13	6.4e-06	0.00038	20.5	0.5	1	23	519	541	519	541	0.97
13	13	2e-05	0.0012	18.9	3.3	2	23	548	570	547	570	0.94

Sequence Information

Coding Sequence: ATGGAAGAATCTGTTGAGATTAAAGATGAAAATACCGATGATAATAAAGATGCCGAGACTGTAGTCTTACAAAATATTCCAATGGAAGGTGAAGAAATTCCTGTAATATTCAGTGATTATATGGAGAATAATTCTGAtggtaatttacaaattaatagCGTCCAAGATGATGTTATCCACACCTATATTATCGAggAAGGTGAATATAGTGGAATAACATATGACACAGCTGCTTCTGAACAACCAGAAACTAAAGTGAATCAAAATGAGacgattcaaaataatcaagaaacaTCTTCAACGACTATTGAAGATACTACAATGGAGTTTGATGAATATGTTGAAGAATCATCGCAATCATCAATACTTTTGAACAATGAAGAAGAAGCAGAAGACGACGATAGTCAGCGGGAAGAaaatggtgatgatgatgacgatgaagAAGATGATGACGACGAGGATGACGATCTGGCTAATTTGCAAGATGCAATCGATACTGAAGATGACGATGAAGAAGGCGTCCATGATTGTGACTTATGTCTGCgtaaatttaaaacaacagCCGGCTTAAAACGACATAAAACTGTCAATCATGCTGAAGCTGAATTCCAAGAGGATCCATTGAGCTTTGAATTGTGTGCATGTTGTGGAGAGCCCCTAGATTCAGCTCATACtacGGGTGATTTCAAATGTACGAAATGCGAAAAATTATTTGCCGCACAATTGAATTTGGATCGTCATTGTAGTATTGAACATTGTGAaagtgataattataaatgtgtAGAATGTAAAAAAGAGTTTAAAGAAAAGGAACAATTACTTGAACATATGAAAGTACATCCGTTAACGAAAAATGTTAAATGTCCAAGTTGTAGTCGGGAATTTACTAGAAAATATCATTTAGATCGTCATATTGCCCAAACTGGATGTAATGGTGCACCAAGACGATCATTTTTATGTCGTgTCTGTAATAGAGTTTTTCATCGTAAGGATAATTTGGCTGATCATTTACGTGTCCATGCCGGTCAagttaaaaagaaaaaaacctTCACTTGTGAATATTGCAATAAAGAATTTCACGGTTCGGCATTATTAAATATCCATGTTAGAACCCATACAGGTGAACGTCCATATCCTTGTGATTTATGTCCGAAACGATTTCCATCAAGTGGGGCTATGAAGAAACATCGACGTATGCATACTGGGGAACGGCCTTATGTTTGTAAAGAGtGTGATAATAGATTTGCAGCAAAGGAAACATTGAATCGTCATATGCGCACCCATACGGGCGAGAAACCACATTCATGTCAATTTTGTGGTAAATCATTTATACAAGCTTCACAATTACGTGCTCATATATTTCATCATACTGGCGAGAATGCTTATACTTGTCCCCATTGTAATCGTGCATTTAATCGTAAATTACGTTTAACAACACATATTAAATATATGCATGAAGGAGCTGAACCGATGTCTTGTTCCGAATGTGAGAAAACCTTCTTTAGAAAAGAGGATTTAGCTCGACATTACCTATGTCATACCGGTGAAAGGccTTTCGCTTGCGATGTATGCCAGAAAACGTTTGCCGTAAAATCATCACTGAAAATCCATAAATTGACCCATCGTAAAGAACCACCTTGTAGTTGTGATACTTGTGGTCGGGCATTTATCCGGCAAGATTGTTTAATGCGTCATATACGCGCCCGTCATCGTGACGTATTAGAAGATATTATGGCCAGTGCTGAAAAGAAAcgtttacaacaacaattattgagtGCTGCAACAGAAGCAGcaacgaaaaatcaaaatagtttCACAGAAAATATGGTATGGAATGAATTAACATTAACTGAatcaataaaagaattattaacaatattggTTGAGGAGGCATGTTTGAAAGATTTCGGTTTCCCAGATGCACCggttgataaaattttagatGCTGTTATTAAGAAATGCGGCCATAAACCGGCATCTGAAGAAGATTTCGATTATATCGGACGTATGAGAGAGaatgcaaaattattatttacggttgttattgatgatgaagctgtaaaatcattattgaataatcaaacTGTTGATGAGGTTATTGTGCATGTTCTGAGATTGGCGAAAgcggaaaataaataa
Protein Sequence: MEESVEIKDENTDDNKDAETVVLQNIPMEGEEIPVIFSDYMENNSDGNLQINSVQDDVIHTYIIEEGEYSGITYDTAASEQPETKVNQNETIQNNQETSSTTIEDTTMEFDEYVEESSQSSILLNNEEEAEDDDSQREENGDDDDDEEDDDDEDDDLANLQDAIDTEDDDEEGVHDCDLCLRKFKTTAGLKRHKTVNHAEAEFQEDPLSFELCACCGEPLDSAHTTGDFKCTKCEKLFAAQLNLDRHCSIEHCESDNYKCVECKKEFKEKEQLLEHMKVHPLTKNVKCPSCSREFTRKYHLDRHIAQTGCNGAPRRSFLCRVCNRVFHRKDNLADHLRVHAGQVKKKKTFTCEYCNKEFHGSALLNIHVRTHTGERPYPCDLCPKRFPSSGAMKKHRRMHTGERPYVCKECDNRFAAKETLNRHMRTHTGEKPHSCQFCGKSFIQASQLRAHIFHHTGENAYTCPHCNRAFNRKLRLTTHIKYMHEGAEPMSCSECEKTFFRKEDLARHYLCHTGERPFACDVCQKTFAVKSSLKIHKLTHRKEPPCSCDTCGRAFIRQDCLMRHIRARHRDVLEDIMASAEKKRLQQQLLSAATEAATKNQNSFTENMVWNELTLTESIKELLTILVEEACLKDFGFPDAPVDKILDAVIKKCGHKPASEEDFDYIGRMRENAKLLFTVVIDDEAVKSLLNNQTVDEVIVHVLRLAKAENK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00929766;
90% Identity: iTF_01566428;
80% Identity: -