Scau010646.1
Basic Information
- Insect
- Stenodera caucasica
- Gene Symbol
- egg
- Assembly
- GCA_037414795.1
- Location
- JAZBGZ010002470.1:4186-4659[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.8e-11 1.7e-08 33.6 0.0 28 71 32 75 12 80 0.78
Sequence Information
- Coding Sequence
- ATGTATTTCACACCACGCGATCAAGTAATAACGAATCGTTTATATCAGCCACATCAATGCTCACCAGCTTGCGAAGATTATGTACTCAAAATACGTGGTCGTAAAGagattttatataattcacCTTGTGGCCGTAAGTTACGTaatatgtttgaaatttataaatatttacgtttaACAACTAATGAAATgacagttgatttatttgatttcagtATTGATGTACGTTGTTTAGCTGAATTTACAGTTGAATGTGAACCAACTATTaaagatttatcaaatggTTTAGAACAAGTAACAGTACCTGTTATAAatggtataaataatgataaattagatTTCTGTAATTATATAACACATCGACAACCAATGGATGatgtattattaaatttaaattaa
- Protein Sequence
- MYFTPRDQVITNRLYQPHQCSPACEDYVLKIRGRKEILYNSPCGRKLRNMFEIYKYLRLTTNEMTVDLFDFSIDVRCLAEFTVECEPTIKDLSNGLEQVTVPVINGINNDKLDFCNYITHRQPMDDVLLNLN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -