Scau002683.1
Basic Information
- Insect
- Stenodera caucasica
- Gene Symbol
- -
- Assembly
- GCA_037414795.1
- Location
- JAZBGZ010000182.1:62503-71703[+]
Transcription Factor Domain
- TF Family
- AF-4
- Domain
- AF-4 domain
- PFAM
- PF05110
- TF Group
- Unclassified Structure
- Description
- This family consists of AF4 (Proto-oncogene AF4) and FMR2 (Fragile X syndrome) nuclear proteins. These proteins have been linked to human diseases such as acute lymphoblastic leukaemia and mental disabilities [1]. The family also contains a Drosophila AF4 protein homologue Lilliputian which contains an AT-hook domain. Lilliputian represents a novel pair-rule gene that acts in cytoskeleton regulation, segmentation and morphogenesis in Drosophila [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 0.0042 61 2.3 18.6 29 221 9 179 3 218 0.39 2 6 9.7e-13 1.4e-08 34.1 11.2 349 493 223 381 210 392 0.70 3 6 1 1.4e+04 -7.2 16.6 90 230 425 558 389 598 0.45 4 6 1 1.4e+04 -9.7 26.7 443 490 645 690 610 703 0.44 5 6 1 1.4e+04 -9.0 27.6 130 266 698 828 691 841 0.33 6 6 0.0087 1.2e+02 1.3 11.8 63 244 843 1021 836 1039 0.51
Sequence Information
- Coding Sequence
- ATGTCTTCTTCACAAGTTGAAGAACAAGAATATCATCTGTTCGGAGCACCCTTTAGGGTGAACCCGTCGTCAACGGACCCCGTCACGCAGGACATCCAGAGCAAGTTAGGGGATTTTCAACGATTAAAACCATTTCTTGATCAAAAAGAATTAATTGGCGTTGATGGAGTACCACCAAGTCCTGGTGTGCCAGCTTCATCTTCATCACGTCATCATCCATTCTCTTCGTCATCTGGGGCCAGTTCTAgaTTACATCCATCACCAGAAGCTAGATCTGAATTCAAAAAACCACACCATCATCATATACATCATTCAActtcttcatcttcttcttcCACATCATCGCGCGGTGGTTATGTAAAACCAACAGATGGTAAACCACCATATGAGGGACGTGGTGGTTATCCTGGACAACCAGTTAAACATGGTAGTGGTATAACGAATCATAGATCAAATGGTATTTTACCAGCTAAAGGACCACCTCCATCATCACCAAATTCTACATCAACAACCCGGATACAttcaaatagtaataataataataataataatggtgcaTCATCGTCTTCAAGGAATCAATCTCGTATTTCTCACGAACAAAATCAGGGAACTTCACATCCGGCTGGTCCGAGAGAAATTTTACCTTCTGCAACACCCAATCCCGATATGGAAAATATATTCAAgGAGATGATTGAAGTCCGACCACCGCTCACTGCCATAGCTGCAACACCCAGGATAGAACCAGATAATAAGTTTACCTTCAATCCTGTACTAAGCaagtTGACGGACTCAATACTACCAACACCGACTACACCAAAAAAACGTGAACGAACAACGTCTAATGTCAGACAGTCAACTGACTTAAGAGATGATCTCAACTTATctgatgatagtgatgatgaacAAAAACGTGAATCTCTACAATCTTCCAAGTTACCAATAGAAAAttCAAGAATGATGTCCCCATTGGTGGCAACTTCAGGCAGTACCTTTCAACAAGAATCGATAAATGTAGCAACCACAACAACAGGTCCTATAGTAgtaggtggtggtggtggtggtagttCATCAAGTGATTCATGTTCAGATTCTGGTACAGAAAGTGAGACAAGTAGTGATGattcaattgaagaaaatgtcTCATCATCGAATCCAACatttaagaaaaataatgGTGGTGTTAGTGAATTAAtacaatcatcatcaccaccagTATTACCACCTCAAcaaattgaagagaaaaaacGTTGGAATCTAGGTTCATATATAGATCAAAATAgtgtgaataataataatcacaataataatcataataaaattgattcaatcaatcaatctcCAAAAGTGCTCTCACCATTGACATGTGGTAGTAGTAGTATGCTTCCATTAAACAATcgtaatagtagtaataatgataaaaaacaacGTGTCATTGAAGAATCCGATGGTAGTAGTGATTCAATAAAAGATTTAGATATGCCAGTtaccaaaaatataaatagtgatagtgataatgatgatgaagatgataatgattatgaaAGGACTagtaaaaaaactaaaaaaccAAAACCAATGACACGACCAGGTCCAAGGACTAAATCTATAGATACCAGTGATTCTGATGTagatcatcattatcatcataaaaCTAGTGCCAATAGTGTTAAATCAtcaataccaacaacaacaacaacattaataaatagtgaaaaattattagcaAAACCAAAATCAAATCGAGGTAGACCACGTAAAATTAAACCATctgatattaataattcagATGGTGAAATTCGTACTAATAAGAAACGTGGCCGACCaccattatcaaaaaatcgtCGATCACCACCACCAAGTGGCTCAGATGTTGAAATGATAACTACTAATATGACAACAATACgtgctaataataataataatagtaataataacagtaataataaaaaacgtgGCCGTCCACCAAAACCACGACCATCATCCCCACCAAATTGTAGTGGGAGTAGCAACAGTAGTAGCAGTAGTAGTAGTGATGGGAGTAGTAGTAGTACTGATAGTActagtgatgatgatggtgattataataaaaaacaacaaaaacaaacaaaaatacaacGTCGAAGACTATCAAAAGCTGAAGCTACATCATCAAGTGGTAGTGATAGTGATTCATGTCATCGCtcacaaaaaatcaaagataGATATCacagtaacaataataatcaaaaaattataagtaataataataataataacaataataatagtaaacaTAAATCACCGAAatctattgatgataatagtaGATTATCGAAGAAAAGTAAAAATCGAtcagatgataatgatgatgatgatgaatggGGTAAACAAAATAAGAACAAATTGAGAAATGTAGATTTTGATAAAGAGAAATCGATAGAATCATCAAAGAAAAAGGATCATTGTAAACGTAAATCACGCAGAACATCAATAAGTGCTGCAacattaccaacaacaactGATACAAGTGATAGTGATCATACAACAACTATtactaataatttcaataaaaataatattatgaatAGTAAAAATagtaaatcgaaaatttacaaaagtGATAgtgattcaaataatcaacattcAGATGATAGTGATGATTTGCATCGTAAAAAATCTGAATTAACAACATCAAGTACTGTAGGagttataacaacaaaagtcgatgaaaataattcaataaaagacAAAAAGAAAAGTGATACATTACGTAAACTATTTACATTAAAACGTGCTGATACAGATAGTTGTGGTAAAGGTGGTGGGAAAGGTGGTAAAGGTGGTAAAGGTAAAGGTGGTGTTAATGTAATTTACGCTGATGAAGAACGCAATAATGGTAATTATGAACGTAATAATAGTTCATCAGTTGAAGATGAAACACCAATATTACCAACAAatccaacattattatcaccaataccaacgaaaaataatgaattatcaacaatcaaaCTCTCAAAGactgaattcaataataacaataataataatagtaataataataataataataataataaagagattcaattattatcaaaagcttcaatgaaaattacaattgctCTAAATCATATTGATATAAATCGTATAAAACATTTAAAGAAACATTTGGAAGATATACGACATccttatttgaaagaaaatgatAAGAAATTGTGTGCACCGCCTAAACATCCATTTCGGGAAa
- Protein Sequence
- MSSSQVEEQEYHLFGAPFRVNPSSTDPVTQDIQSKLGDFQRLKPFLDQKELIGVDGVPPSPGVPASSSSRHHPFSSSSGASSRLHPSPEARSEFKKPHHHHIHHSTSSSSSSTSSRGGYVKPTDGKPPYEGRGGYPGQPVKHGSGITNHRSNGILPAKGPPPSSPNSTSTTRIHSNSNNNNNNNGASSSSRNQSRISHEQNQGTSHPAGPREILPSATPNPDMENIFKEMIEVRPPLTAIAATPRIEPDNKFTFNPVLSKLTDSILPTPTTPKKRERTTSNVRQSTDLRDDLNLSDDSDDEQKRESLQSSKLPIENSRMMSPLVATSGSTFQQESINVATTTTGPIVVGGGGGGSSSSDSCSDSGTESETSSDDSIEENVSSSNPTFKKNNGGVSELIQSSSPPVLPPQQIEEKKRWNLGSYIDQNSVNNNNHNNNHNKIDSINQSPKVLSPLTCGSSSMLPLNNRNSSNNDKKQRVIEESDGSSDSIKDLDMPVTKNINSDSDNDDEDDNDYERTSKKTKKPKPMTRPGPRTKSIDTSDSDVDHHYHHKTSANSVKSSIPTTTTTLINSEKLLAKPKSNRGRPRKIKPSDINNSDGEIRTNKKRGRPPLSKNRRSPPPSGSDVEMITTNMTTIRANNNNNSNNNSNNKKRGRPPKPRPSSPPNCSGSSNSSSSSSSDGSSSSTDSTSDDDGDYNKKQQKQTKIQRRRLSKAEATSSSGSDSDSCHRSQKIKDRYHSNNNNQKIISNNNNNNNNNSKHKSPKSIDDNSRLSKKSKNRSDDNDDDDEWGKQNKNKLRNVDFDKEKSIESSKKKDHCKRKSRRTSISAATLPTTTDTSDSDHTTTITNNFNKNNIMNSKNSKSKIYKSDSDSNNQHSDDSDDLHRKKSELTTSSTVGVITTKVDENNSIKDKKKSDTLRKLFTLKRADTDSCGKGGGKGGKGGKGKGGVNVIYADEERNNGNYERNNSSSVEDETPILPTNPTLLSPIPTKNNELSTIKLSKTEFNNNNNNNSNNNNNNNNKEIQLLSKASMKITIALNHIDINRIKHLKKHLEDIRHPYLKENDKKLCAPPKHPFRE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -