Scau002272.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Stenodera caucasica
Gene Symbol
Rfx2
Assembly
GCA_037414795.1
Location
JAZBGZ010000139.1:57659-62218[-]

Transcription Factor Domain

TF Family
RFX
Domain
RFX domain
PFAM
PF02257
TF Group
Basic Domians group
Description
RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 8e-38 2.9e-34 117.2 0.0 3 78 253 328 251 329 0.97

Sequence Information

Coding Sequence
ATGGCAACAACAGCTCGTTTTGCAGCAGGAGGCAGTAGCAATCCTCCCACCCCAACACCAGCTACATCACCCCCAGCTCAAGCGCAAGCCACTCAGTTAATCGTCCTACCTGCTAGTCTACATCAGtCGAATGCAAATGGGACTATTGTTAATGGTGTGCCAGTAATTGACGTTTCTGCATTAGAACAAGCAGCTGAATCAAGTAACGAAAGTACAGCAACAACTGAACAACAAAGTGAAACTCAAGAAGAAACAATTGCACAAAGTTCACCACATTTTATTACAGTAACAGAAACTGCTGCTAGATCATACGCTTCTTTAACACCTGTACAACCTACAGTAGtGGCTGACGGTGATACGGTGGCGTCACATCAAGGCTATCATATACAATATGTTGAGCCTGAAATATATGCAACACCAACAAATAGTGGTCAAGCACAAatggCGTATCCGGTATATACAGTTGGTGAAACTGCAACATTATATACAGCAGGACAAGGTCAATATTATGCTGCAACAAATGCTGGAACATCAGTTGTTGCTAGTACTGTTGGTTATAATGCTACTAGTGGACATTATGTTGTACAACAAACTGTTGATGCTGAAAATCTAATATCATCAAGAAATTCACCACAATCCACGAATTCggaTGCTAATTTCGTGGCTACAGCAACTGTTCATGCTACACCAACAACCGGACAAGTTAATAATGAAGAAGTAGGTTCTGCTTTAGGTCATGCTACACGAGTATCTCCAGCTACTGTACAGTGGCTATTGGAGAATTATGAAACAGCTGAAGGTGTATCATTACCACGTTCAACATTATATGCACATTATTTACGTCATTGTgctgaaaataaattagaacCAGTTAATGCAGCATCATTTGGTAAATTGATACGTTCTGTATTTTTGGGTTTAAGAACACGTCGTCTTGGTACACGTGgtaattcaaaatatcattattatggtATACGTGTTAAGCCAGGTTCATCATTAATGAATATGGATGATTCTGGTAATCGTGTTGTATTAAATACATCAAATAATACAGGAAAAGCACATGGTACTGTACGTCCATTCAAACGTAATTCTGATTCAACAgattcatcaatatcattaagTATATTATCACAACATGTAACATATTTAGGAGATGGTAGTAATGCTATACCTGCATTTCCTGATATACATTTCAATGAAGCTTTACCAGATGATTGCTgttttgatgatgttgatacTCTAaagtCTATCTATCGTGAACATTTAGAAGCTTTCTTAGATGCTATATTAGGTTTAGAATTTGGtacaattgaatcattatGGCGTGAATTTTGGCGATCAcagtacaataataatagtgatgaatgtgaagaagaaaaatatttatcaaaatcaaaattatttggtTTATGTTCATTACCACCAGTTCAACAATTTATGAAACAAGTTGATCTCatgttttatcaaaatttaatacaTGTATTAGTGCCAGATGTATTGAAACCAATACCAGCTACTTTAACACAATCTATACGAAATTTTGCTAAAAatttgGAAAATTGGTTGACAAATGCTATGGCCGGTGCACCAAGTGAAATGTTAAATGTAAAATTATCAGCTGTATCAGCTTTCAGTTCTAGTCTAAGACGTTATACCTCATTAAATCATTTAGCACAAGCAGCTAGAGCTGTATTACACAATAGTACACAAATTGCTCAAATGTTAACAGATTTAAATCGTGTTGATTTTCATAGTGTACGTGAACAAGCATCATGGGTATGTCAATGTGACAATGATATTGTTGCACGATTCGAGAATGATTTCAAATTgacattacaacaacaaaattcattaGAACAATGGGCATCATGGTTGAAAAATGTTGTTAAAAGTGCATTAAAACCATATGAAGGAAAACCAACATTCTCAAAAGCTGCAagacaatttctattaaaatggAGCTTTTATAGcTCAATGGTTATTAGAGATTTAACACTAAGATCTGCAGCTAGTTTTGGTTCATTTCATCTAATTCGTTTGTTATATGACGAATATATGTTCTATTTGATTGAACATCAAGTCGCTGAAGCTACAGGAGTTGTACCTATTGCTGTTATTTTAGAAGGAATTAAACAAGACATGATGCAAAGTAATTTATCAGTTTATGGTAATGATGGATTATGTAATGGTGGTATTAGCACAAAATTAACATGCGTCAGTCCATCTGAACATTTATCAAAACGTGCAAAAATTAGCTAG
Protein Sequence
MATTARFAAGGSSNPPTPTPATSPPAQAQATQLIVLPASLHQSNANGTIVNGVPVIDVSALEQAAESSNESTATTEQQSETQEETIAQSSPHFITVTETAARSYASLTPVQPTVVADGDTVASHQGYHIQYVEPEIYATPTNSGQAQMAYPVYTVGETATLYTAGQGQYYAATNAGTSVVASTVGYNATSGHYVVQQTVDAENLISSRNSPQSTNSDANFVATATVHATPTTGQVNNEEVGSALGHATRVSPATVQWLLENYETAEGVSLPRSTLYAHYLRHCAENKLEPVNAASFGKLIRSVFLGLRTRRLGTRGNSKYHYYGIRVKPGSSLMNMDDSGNRVVLNTSNNTGKAHGTVRPFKRNSDSTDSSISLSILSQHVTYLGDGSNAIPAFPDIHFNEALPDDCCFDDVDTLKSIYREHLEAFLDAILGLEFGTIESLWREFWRSQYNNNSDECEEEKYLSKSKLFGLCSLPPVQQFMKQVDLMFYQNLIHVLVPDVLKPIPATLTQSIRNFAKNLENWLTNAMAGAPSEMLNVKLSAVSAFSSSLRRYTSLNHLAQAARAVLHNSTQIAQMLTDLNRVDFHSVREQASWVCQCDNDIVARFENDFKLTLQQQNSLEQWASWLKNVVKSALKPYEGKPTFSKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVAEATGVVPIAVILEGIKQDMMQSNLSVYGNDGLCNGGISTKLTCVSPSEHLSKRAKIS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01368756;
90% Identity
iTF_00929310; iTF_01565988; iTF_00841582; iTF_00986873; iTF_00814140; iTF_00813457;
80% Identity
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