Scal040442.1
Basic Information
- Insect
- Stenodema calcarata
- Gene Symbol
- stc_1
- Assembly
- GCA_963920205.1
- Location
- OY986064.1:13361724-13368438[-]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 1.9 4.1e+04 -4.0 1.6 15 19 461 465 460 465 0.81 2 14 0.00056 12 7.2 18.4 4 18 508 522 496 523 0.90 3 14 0.81 1.8e+04 -2.9 0.5 6 10 549 553 548 553 0.92 4 14 4.6e-08 0.001 20.3 13.2 1 19 559 577 559 577 0.98 5 14 0.39 8.5e+03 -1.8 23.2 3 19 624 640 611 640 0.91 6 14 2.4e-09 5.2e-05 24.4 10.7 1 18 681 702 681 703 0.88 7 14 2 4.4e+04 -4.2 2.2 5 10 732 737 732 737 0.91 8 14 0.0071 1.6e+02 3.7 9.7 1 11 743 753 743 754 0.95 9 14 1.1 2.5e+04 -3.3 0.6 4 10 758 764 757 764 0.86 10 14 6.9e-10 1.5e-05 26.1 17.0 1 18 770 787 770 788 0.97 11 14 2 4.4e+04 -6.2 8.7 14 19 840 845 827 845 0.75 12 14 0.26 5.7e+03 -1.3 0.3 9 14 863 868 861 873 0.83 13 14 3.3e-05 0.71 11.2 8.0 1 18 881 901 881 902 0.86 14 14 0.34 7.5e+03 -1.7 18.0 3 19 914 934 913 934 0.87
Sequence Information
- Coding Sequence
- ATGGCTTCTAATTGGGACTGGAACAACGGGGGTTCGTCCTATCAGCAGCGCGGGAGGGACATTTGGTCCAACGGCGCCGTTTACTACCCTCAACCCACGACCTCCGGCGGCACCACTTACTACGGACCGCCTCCTCACTCTTCCGACTGGTCGCCGAATTCTCAGCCCAACTACGCCAACCACCAATCAGTCGGAAACGGTAGTGGAAATGGGCGGTCGAGGAATGCGGAAGAGTTTTTCGATTTGTTCAGAAGCGGTGGGTCCCAGAGAGACGGGTCAAACAACGTGGCGCAACAACAAGACTACGTCGGTGGTTTTGGCGGGATTAGCTACCCAGCTACTGATTACTACCAGGATTCTTACGTACCCACAATGGTCTACAACGCGAGCCACCCAAACAACAATTCCAGTGCtgCTGAATGGAACGGTCGTGAAGAAGCGCCTTCTACGTCCAGAGGACCAGTTACTGATGAAACGATTGCCGTCGGTGGTCCTACAACGCAGACCTTTGGTAAAGCTCCGGGTGGCCCCTTGGGGACTTTGGGTTCAGGAACTCATCCGCGCCAGAGTTCCAAGGACAAAGGAAGCACTCACAGTGGGTCGAGTATGAACGCCAACTACGCCAGAAACAACGGCAGCAGTGGGGCCAAAAAAGGGTCTGACCGTCTCTACAGGCAACCAGGACGTCAAAATCGATCGTCAAATAGCGGTGGTGCTGCAACTTTCTACAATCAAGGAGCCGGAGCTATGAACGGGTTTTCGTCCAATGATCGAATGGAGTATCGCCGAGGTGGAAAAGGAGGTCCCAGCGGTGGGCCTATGGGAGTTAAAGAGCCCACTTGGGAAGCGAAAAGCTTGGGGAGACAACAGTTGCTGAGCGAAGCAGCTGCGATTCTCCGAGGCAAGACGCCTGGAACTGCTGGAATGATGGATCGAAAGCCGACTGACTTGAGCTGCGATGGCGCCGTCATCGACGGCCCGGACGATGTTCGAAATATGAAGAACTCGCTGTCCAACAGCAAATCGTCTCCTTCCTCTTATAACAATCACAGCAACAACAGCTACGGCGGCGGCAGTGGTGGTAGGCGCAACAACAGTAGTGGATTCCAGAAATCGAGGGATTCCTGGAAATCCAGCGGCAGGGAGGAGTGGAAAAATCGCAGCAGTAAAGGTGATGATAACGTGACGGCTGATCAGAGGGAGCGGCTGACAGAGCAGCTGTACCGGGGAACTTTGGAGTGTTTGGTGTGCTATGACAGGATCAGGCAAGCTGAGCGGGTCTGGTCCTGCAATAACTGTCACCACGTCCTTCATCTTGGATGCATCGTTAAGTGGGTCAACTCTTCCACTGAAGCCACAGGAGGTGAGAGTGGATGGCGTTGCCCAGCTTGTCAGAATGTTACGCAGAACATCCCAACAGAGTACAAGTGTATGTGTGGGAAGGTTAATGACCCGCAGTGGATTCGTGGAGATACCCCACATTGCTGTGGTCAAATCTGTGGGAAGCGGAAGGACTGCCCTCACGGCTGTACGCTCCTCTGCCACCCTGGCGCATGTCCTCCCTGTTGTGCTAACGTCGATCGTTCCTGTGGTTGCGGTCGTACGTCGCGGATCGTCATTTGTTCGTCTGCTGTAACGTTTGACTGTGAAGATGTCTGTGGGAGAGCTCTCAATTGCGGGTTCCACTCCTGCACTTCCACCTGTCACCAGGGCCCCTGCTCTCCTTGCAGCAAAACTATACATCAAACATGCAACTGCGGTCGGGCTGAACGGGACCTGGACTGCGATGGCCATACCATCCCCCCAGAGATGGATGGTCCAACTTCGTACTCTTGCGGCTCCCCTTGTCCACATAATCTCTCCTGCCTAAAACACCCTTGTCACATGACCTGCCACCCTCCGCCCTGCCCTCCTTGCCCTTTGTCGCCCCTCGTCCTTCTCAAGTGCCAATGTGGAAAAGAGGACGTCACACCCGGCTCGAGGTCCTCCTGTGCAGACCCTGTCGTCCTCTGTGACTCTATCTGTGACAAAATGCTGAACTGCGGTCTAGCTGAAGCCCGTCATCGGTGCAAAGCAAAATGCCACGACGGGCCGTGCCCGCCCTGCGATGGACTCACTTCAGTTCTATGTCGATGCCACGCAATGTCAAAAGACATTGACTGTAAAGATCTGACTGGGAACCCTGAAGACACCAAGTGTCAGAAGAGGTGCACCAAGAAACGTAATTGTGGCAAACATAAGTGCAATCAACAGTGTTGTGTGGAAGTCGAGCACATCTGCCCTCTGGTGTGCAATAAGACGTTGAGTTGTGGGCAACACAAATGTGAACGCTTGTGCCACAAGGGCCATTGTCCTCCCTGTCTTTCAGCTAGTTTTGAAGAGCTGCACTGCGAATGTGGGAAGTCTGTGATTCTGCCGCCCATCCCCTGCGGCACCCGTAGCCCTGACTGTCCCGAGAAATGCAGCCGTCCTCATCCCTGCGGCCACGTCCCTCTCCACAACTGCCACTCTGCTCTTGAATGTCCCCCATGCACCGTTTTTGTCTCTAGATACTGCCACGGAGCCCATGAGCTGAGGAAGACTGTGCCGTGTCACATGGGTGAATACTCCTGTGGACGCGCCTGCGGGCGGTCTCTACCCTGTGGTCACAAATGCATCAAAACCTGCCATTCCGACTCCTGCCTTAAGCCCGGAACGCCCTGCACTCAACCCTGCACCGAATCTAGGGAGGGCTCCTGCACCCACCCGTGTGCCGCACCTTGTCACCCTGGTAAACCCTGCCCTCAGAACCACCCTTGCCAGGCTAAGGTTGAAGTTACTTGCGAGTGTGGTAGGAGGAAGGTGACGAAAACTTGTTGTGAGAACAGCTCCGAGTACCAGAGGATCGCCACATCACTCCTAGCGGCCAAAATGGCCGACGTCCGTCTGGGAAAGTCCATTGATACAGCTGACATGACGTCAGTAGCTTCCAAAATGTCTCTTAAAACGTGA
- Protein Sequence
- MASNWDWNNGGSSYQQRGRDIWSNGAVYYPQPTTSGGTTYYGPPPHSSDWSPNSQPNYANHQSVGNGSGNGRSRNAEEFFDLFRSGGSQRDGSNNVAQQQDYVGGFGGISYPATDYYQDSYVPTMVYNASHPNNNSSAAEWNGREEAPSTSRGPVTDETIAVGGPTTQTFGKAPGGPLGTLGSGTHPRQSSKDKGSTHSGSSMNANYARNNGSSGAKKGSDRLYRQPGRQNRSSNSGGAATFYNQGAGAMNGFSSNDRMEYRRGGKGGPSGGPMGVKEPTWEAKSLGRQQLLSEAAAILRGKTPGTAGMMDRKPTDLSCDGAVIDGPDDVRNMKNSLSNSKSSPSSYNNHSNNSYGGGSGGRRNNSSGFQKSRDSWKSSGREEWKNRSSKGDDNVTADQRERLTEQLYRGTLECLVCYDRIRQAERVWSCNNCHHVLHLGCIVKWVNSSTEATGGESGWRCPACQNVTQNIPTEYKCMCGKVNDPQWIRGDTPHCCGQICGKRKDCPHGCTLLCHPGACPPCCANVDRSCGCGRTSRIVICSSAVTFDCEDVCGRALNCGFHSCTSTCHQGPCSPCSKTIHQTCNCGRAERDLDCDGHTIPPEMDGPTSYSCGSPCPHNLSCLKHPCHMTCHPPPCPPCPLSPLVLLKCQCGKEDVTPGSRSSCADPVVLCDSICDKMLNCGLAEARHRCKAKCHDGPCPPCDGLTSVLCRCHAMSKDIDCKDLTGNPEDTKCQKRCTKKRNCGKHKCNQQCCVEVEHICPLVCNKTLSCGQHKCERLCHKGHCPPCLSASFEELHCECGKSVILPPIPCGTRSPDCPEKCSRPHPCGHVPLHNCHSALECPPCTVFVSRYCHGAHELRKTVPCHMGEYSCGRACGRSLPCGHKCIKTCHSDSCLKPGTPCTQPCTESREGSCTHPCAAPCHPGKPCPQNHPCQAKVEVTCECGRRKVTKTCCENSSEYQRIATSLLAAKMADVRLGKSIDTADMTSVASKMSLKT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00386871;
- 90% Identity
- -
- 80% Identity
- -