Basic Information

Gene Symbol
stc
Assembly
GCA_031894815.1
Location
JAVIWC010002988.1:102728-127096[-]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 2 4.5e+04 -4.3 1.6 15 19 465 469 464 469 0.81
2 15 0.0074 1.7e+02 3.7 21.8 4 18 512 526 498 527 0.91
3 15 0.96 2.2e+04 -3.1 0.5 6 10 553 557 552 557 0.92
4 15 6.7e-08 0.0015 19.8 12.9 1 18 563 580 563 581 0.98
5 15 2 4.5e+04 -4.4 1.3 9 13 587 591 586 592 0.71
6 15 0.041 9.1e+02 1.3 20.0 1 19 626 644 625 644 0.93
7 15 2.3e-08 0.00051 21.3 13.9 1 18 685 706 685 707 0.88
8 15 2 4.5e+04 -4.5 2.2 5 10 736 741 736 741 0.91
9 15 0.012 2.7e+02 3.0 9.7 1 11 747 757 747 758 0.96
10 15 1.3 3e+04 -3.6 0.6 4 10 762 768 761 768 0.86
11 15 8.3e-10 1.9e-05 25.9 17.0 1 18 774 791 774 792 0.97
12 15 2 4.5e+04 -7.9 10.5 10 19 839 849 831 849 0.70
13 15 0.35 7.8e+03 -1.7 0.4 9 14 867 872 865 876 0.83
14 15 0.0002 4.4 8.7 9.5 1 16 885 899 885 910 0.84
15 15 0.18 4e+03 -0.8 18.9 1 19 917 938 917 938 0.92

Sequence Information

Coding Sequence
ATGGCTTCTAATTGGGATTGGATGAACAACGGTGGGGGTTCGTCCTATCAGCAGCGTGGAAGGGATATTTGGTCCAACGGGACCGTGTACTATCCCCAGCCGACGACATCTGGTGGCACAACGTACTACGGACCTCCACCCCATTCTGCAGACTGGTCACAAAATTCTCAGCCCAACTATCGAAACAACCAGTCTCAAGgaaatggcGGAAGTGGACGTTCACGCAATGCAGAAGAGTTTTTCGACTTGTTCAGAAGCGGTGGGTCCCAAAGGGGCGGAGCTAGCAGCCAAGCGCAGCAACCTGATTACGTTGGCGGGTTTGGTGGGATTAGCTACCCTGCCACGGATTATGGCTACCAAGACTCTTTCGTTCCCACGATGGTCTACAACTCCAGCCATCCCAACAACAATTCTGGAACAGCTGAATGGAGCAATAGAAGGGACGAGGTTGGGGCACCATCTACTTCTAGGGGACCAGTGACTGATGAAACAATAGCAGTTGGCGGTCCTACGACGCAAACCTTCGGTAAAGCTCCTGGAGGCCCATTGGGGACTCTAGGATCAGGAACGCATCCACGCCAGAGCTCCAAGGAGAAAGGAAGCATGCACGGCGGATCGAGTTTGAACTCTAACTACGCCAGGAACAACGGAGGTGGCAACGGCGTCAAAAAAGGGTCTGATCGCCTCTATCGACAACCAGGGCGTCAGAACCGATCGTCGAACGGGGGCGGTACAGTTTTCTACAATCAAGGTGGAAGTTCCGTCAATGGATTTTCGACTAACGACCGATTGGATTCTCGTCGAGGAGGAAAAGGAGTCACCGGCGGAGGGTCGATGGGTGCCGATAGGAAAGAGTCCACGTGGGAAGCCAAAAGCCTCGGAAGGCAGCAATTGTTGAGCGAAGCTGCAGCGATACTTCGGGGCAAAACACCTGGAACTGCAGGAATGATGGATCGCAAGCCAACTGACTTGAGCTGCGAAGGGCCCATCGGCGACGGGTCAGACGACGTGAGAAGTATGAAGAACTCGCTCTCCTACAATAAATCGTCACCTTCCTCGTACAATCACAGCTATGCCAGCGGCAACGGCGGGAGGCGCAGTGGGAGCGGTTTCCAAAATAAACCGAGAGATTCTTGGAAATCCAGCAACAGGGAAGATTGGAAGAATCGAAACAGTAACAAAGGTGATGACAAAGTCACAGCAGATCAGAGGGAACGGCTATCGGAGCAGCTCTACAAAGGCACGTTAGAATGTTTGGTGTGTTACGACCGGATCAGACAGTCTGAACGTGTCTGGTCTTGCACCAACTGTCACCACGTCCTTCACCTGGGCTGCATCGTCAAATGGGTCAATTCTTCCACTGAGGCAACTGGAGGAGAAAGTGGTTGGCGTTGTCCAGCTTGTCAAAACGTTACGCAAAACATTCCTACAGAGTACAAGTGCATGTGCGGTAAAGTCACTGATCCGCAATGGGTGCGTGGGGAAACACCGCATTGCTGCGGGCAAGTTTGTGGGAAGCGGAAGGACTGCCCTCACGGATGTACTCTCCTCTGTCATCCTGGAGCCTGCCCGCCGTGTTGTGCCAGCATCGACCGGACTTGCGGCTGCGGTCGAACGTCTCGCATCGTCATATGTTCGTCGTCTGTTACGTTCGATTGTGAAGACGTGTGTGGACGGGCGCTCAACTGCGGACTCCATCCCTGTACCGCCATCTGTCATCAAGGGCCTTGCGCTCCCTGTGACAAAACGATTCATCAAAGTTGTCACTGCGGACGTGCTGAACGGGATCTCGCCTGTGACGGGCATATTGTCCCGCCAGAGATGGGCGGCCCTACATCGTACTCCTGCGGCTCCAACTGTCCCCACAATCTGTCTTGTGAGAAGCATCCATGCCATATGACTTGCCATCCTCCGCCATGCCCTCCTTGCCCCTTGTCGCCTTCCGTCCTCGTCAAATGCCAATGTGGGAAAGAAGACGTCCCACCAGGATCGCGGTCCTCTTGTGAAGACCCGGTCGTTCTCTGCGGGTCGATTTGTGATAAAGAGCTGAATTGCGGCCAACCGGAAGATCGTCACAGGTGCAAAGCGAAATGCCACGAAGGGCCTTGCCCACCTTGTGATGGCGTCACTTCTGTTCTGTGTCGGTGCCATGCAATGGCCAAAGACATTGATTGTAAAGACCTGACTGGGAATCCTGAAGACACCAAGTGTCAGAAGAGATGCACCAAGAAACGTAATTGTGGGAAGCACAAGTGCAATCAACAGTGTTGTATAGAAGTGGAGCATATCTGTCCGCTAGTGTGCACGAAGACTTTGAGCTGTggtcaacataaatgtgaacGCTTGTGTCACAAGGGTCATTGCCCTCCTTGTCTCTCTGCCAGTTTTGAAGAGTTACACTGTGAGTGTGGCAAATCCGTGCTTCTGCCACCTATTCCCTGTGGAACTCGCGTTCCCGACTGTTCCGAAAAATGCAGTCGTGAACACCCCTGCGGCCACGCTCCTCTCCATAACTGCCACTCCGCTCCCGTTTGCCCCCCGTGCACAGTGTTCGTTTCCAGATATTGCCACGGTGCCCACGAGCTGAGGAAAACGGTGCCCTGCCATATGGGTGAATACTCATGTGGGCGCGCCTGCGGCCGATCCCTCCCCTGCGGTCACAAGTGCATCAAAACCTGCCATTCTGACGCGTGCCTTCTACCCGGCGCGTCCTGCTCCCAACCTTGCACCGAACCCAGAGAGGGCTCTTGTTCTCATCCATGTGCCGCGCCTTGTCATCCGGGCAAACCCTGCCCTCAGAATCACCCTTGCCCAGCAAAGGTTGAAGTGACTTGCGAGTGTGGTAGGAGGAAGGTGACGAGAACTTGTTGCGAGAACAGTTCCGAGTACCAGAGAATCGCGACGTCTCTCCTTGCCGCCAAAATGGCCGACGTCCGGCTGGGAAAATCCATTGACACCGCTGACATGACATCCGTAGCTTCCAAAATGTCTCTCAAAACTTTGGAATGCAACGACGAGTGCAAGCTGCAGGAACGAAACCTGAGGCTCGCAATCGGTCTTCAAATCGCCAATCCAGATCTGAGTGCCAAATTGCACCCTCGCTATTCTGAGATGATGAAAGGCTGGGCCAAGAGGGATCGTCGTTTCTGTGAAATGGTCCACGAAAAGCTCGCTCAGCTGGTGCATCTCGCCAAAACTAGCAAACAGAAGAGCCGCGCTCATTCATTCCAATCTATGGGCTCCGCCAAGCGTCAGTTCATCCATGAATATTGCGAACACTTCGGAATCGAATCCGTTGCGTATGATCCAGAACCCAACCGTAACATTGTGGCCACCGCTTGGAAAGATAAGtgcTGGCTCCCTAGCTACTCTCTCATGGAGGTGGTTGCGAGAGAATCTGGACACCGTAAAGTACCTACTCTCCTTCCTTCATTGAAGAAAGACGTAACGCCGGCGGAGAGCACCAAACTTGTTTCGACCGTTAAACCCAAAACGCCAGCAGCTTCGACCACCCCGGACGATCCCTTCATCCCTAAATGA
Protein Sequence
MASNWDWMNNGGGSSYQQRGRDIWSNGTVYYPQPTTSGGTTYYGPPPHSADWSQNSQPNYRNNQSQGNGGSGRSRNAEEFFDLFRSGGSQRGGASSQAQQPDYVGGFGGISYPATDYGYQDSFVPTMVYNSSHPNNNSGTAEWSNRRDEVGAPSTSRGPVTDETIAVGGPTTQTFGKAPGGPLGTLGSGTHPRQSSKEKGSMHGGSSLNSNYARNNGGGNGVKKGSDRLYRQPGRQNRSSNGGGTVFYNQGGSSVNGFSTNDRLDSRRGGKGVTGGGSMGADRKESTWEAKSLGRQQLLSEAAAILRGKTPGTAGMMDRKPTDLSCEGPIGDGSDDVRSMKNSLSYNKSSPSSYNHSYASGNGGRRSGSGFQNKPRDSWKSSNREDWKNRNSNKGDDKVTADQRERLSEQLYKGTLECLVCYDRIRQSERVWSCTNCHHVLHLGCIVKWVNSSTEATGGESGWRCPACQNVTQNIPTEYKCMCGKVTDPQWVRGETPHCCGQVCGKRKDCPHGCTLLCHPGACPPCCASIDRTCGCGRTSRIVICSSSVTFDCEDVCGRALNCGLHPCTAICHQGPCAPCDKTIHQSCHCGRAERDLACDGHIVPPEMGGPTSYSCGSNCPHNLSCEKHPCHMTCHPPPCPPCPLSPSVLVKCQCGKEDVPPGSRSSCEDPVVLCGSICDKELNCGQPEDRHRCKAKCHEGPCPPCDGVTSVLCRCHAMAKDIDCKDLTGNPEDTKCQKRCTKKRNCGKHKCNQQCCIEVEHICPLVCTKTLSCGQHKCERLCHKGHCPPCLSASFEELHCECGKSVLLPPIPCGTRVPDCSEKCSREHPCGHAPLHNCHSAPVCPPCTVFVSRYCHGAHELRKTVPCHMGEYSCGRACGRSLPCGHKCIKTCHSDACLLPGASCSQPCTEPREGSCSHPCAAPCHPGKPCPQNHPCPAKVEVTCECGRRKVTRTCCENSSEYQRIATSLLAAKMADVRLGKSIDTADMTSVASKMSLKTLECNDECKLQERNLRLAIGLQIANPDLSAKLHPRYSEMMKGWAKRDRRFCEMVHEKLAQLVHLAKTSKQKSRAHSFQSMGSAKRQFIHEYCEHFGIESVAYDPEPNRNIVATAWKDKCWLPSYSLMEVVARESGHRKVPTLLPSLKKDVTPAESTKLVSTVKPKTPAASTTPDDPFIPK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01366024; iTF_00884735;
90% Identity
-
80% Identity
-