Basic Information

Insect: Stenodema calcarata
Gene Symbol: ham
Assembly: GCA_963920205.1
Location: OY986058.1:17224674-17229088[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.045 7.5 8.5 2.6 1 23 26 49 26 49 0.97

2 8 3.9e-08 6.5e-06 27.5 0.8 1 23 55 77 55 78 0.96

3 8 4.3e-06 0.00071 21.1 2.6 1 23 84 106 84 106 0.95

4 8 2.6e-05 0.0044 18.6 5.0 1 23 112 134 112 134 0.99

5 8 0.0025 0.42 12.4 0.7 2 21 142 161 141 162 0.95

6 8 8.9e-09 1.5e-06 29.5 0.7 1 23 558 580 558 580 0.98

7 8 3.2e-07 5.4e-05 24.6 1.7 1 23 586 609 586 609 0.97

8 8 3.5e-06 0.00059 21.4 3.3 1 23 615 637 615 637 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.045	7.5	8.5	2.6	1	23	26	49	26	49	0.97
2	8	3.9e-08	6.5e-06	27.5	0.8	1	23	55	77	55	78	0.96
3	8	4.3e-06	0.00071	21.1	2.6	1	23	84	106	84	106	0.95
4	8	2.6e-05	0.0044	18.6	5.0	1	23	112	134	112	134	0.99
5	8	0.0025	0.42	12.4	0.7	2	21	142	161	141	162	0.95
6	8	8.9e-09	1.5e-06	29.5	0.7	1	23	558	580	558	580	0.98
7	8	3.2e-07	5.4e-05	24.6	1.7	1	23	586	609	586	609	0.97
8	8	3.5e-06	0.00059	21.4	3.3	1	23	615	637	615	637	0.98

Sequence Information

Coding Sequence: atgacgAGGGAATTACTTTGTGTGCGCAGGTTGGACGATCATCTAATTAGCGGGCACAGATACGCAGCCAATCAATATCGCTGCGAAAAGTGCAGCCGCACTTACGCTTGGCGCCCATCCCTGCTCCATCACCAGACGACCAAACACGGCGAAGTCCGACGCTACCCTTGCGAGAATTGTCCAAAACTCTTTTCCGACCCTTCGAACCTACAGCGGCATATAAGATCGCACCACGTAGGAGCTCGATCCCACGCTTGCACTGAGTGTGGAAAAACGTTTGCGACTAGTAGCGGCCTAAAGCAGCACACCCACATCCATTCGAGCGTCAAGCCCTTCCAATGCGAAGTCTGCTTCAAGGCGTATACACAGTTTTCAAACCTTTGCCGACATAAGCGTATGCACGCTGACTGCCGGATGCAAATCAAGTGCGCCAAGTGCAACCAGACGTTTTCTACTGGTACCTCGCTAGCTAAACATAAAAGATTTTGTGACTCTACCAACCCGTCACCAGCAGGCGCTATGTCTCAACCGCATCACGGCCCCCATCCATCGCCAAATCCCTTCATGTTGTACCCAAGGCCTGGTTTGCCTTTTTACCATCCGGGTCTCCTTCCGACGTACGGAGGAGCGCTGGCCGCTGGCTCTCCCTTGTTCAACCCTCACGCTTCCTTCTTTGGATCGCCTCACGTTCCTTTCCCACTCGCCCCTAACCACGCTCACCTCTCCAAAGACGAATTGGAAGAGAAATACAGGCTCAGCATCGACCCGTACTCCTCTTACAGGAGATCTAGAAGTCCTTCACCATCTAGCAGCGCCCTTTCCCCTGTGGAGCCGGTAACTCCTTCAATGAACTCCATGATTCATACAAACAAGGTCTCACCACCTGCTGCTGAAGAGGCGGTCTCAAACGAGCGTCCAAGCCCAGCTAGACCACCAACTTCCGCCAAAGTCCAACTCGATCAACCTCAGGACCTTTCATGCAATGACGGTATGAGATCGCCATTGTCATCGAGATGTCAATCTCCGAGTGATCAGCCGTTGGACTTGCGGATTGGAGGCAAGCGCAGAAGGAGCCCCAGTCCCGATCACTCCAAAGAGGACAGATCCGATGTTTGGAGGGAAGCCGAAAACCATAGCCCACCTTCCAAAAAAGGAAACTTCGTACAGATTGTGAAGAAAGAGACCGAGGAGGATGAAGATGACAATAAGTCTGACATCAAAGTCGAAGTTGAAGAGGACGAGAAGGATAATAGAAAAGAGCCCTCAGAAAGGGAGAGTAGCCCTAAGCTAAAACCTGCTGATTCTCCAGCCAATTCATTAAACAATTCGACGGGTTCATCAAATAATTCCGTCTGCTCTGACATACCGTCGCCTCCCGTTTATCCCCGCCCAGTACATCCGATGTTCCTGGAAAGCCTGTATAGTCATTCTCAGGCATCTGCGCCTTTCCATCCTCCTCCGAATCCCGTTTTCACGTCTCCGTCTGCTTCCAAGTTCTCCAGGAGCTTCCCGGCGTTTTTAGGAGCGATCGGCGGACCGACCTACAGCCTGGCCTCTCGTGGACTGCAGAGTCTTCATCACCATCTCAACGGCCGAGGCCCTCCTCCGAAAACATTCCAGGAAGTTCTTGGAGGACAAAGCGCTGCTCAAGGTGCCAGAGTCAAGGATAGATACGCTTGCAAATTCTGCGGAAAAGTATTCCCAAGGAGCGCTAACCTTACTCGTCACCTTAGAACTCATACCGGAGAACAGCCCTACAAGTGTAAATACTGCGAGAGGTCTTTCTCTATATCATCCAACCTCCAAAGACACGTCAGAAACATTCACAACAAAGAAAAACCCTTCAGGTGCCCACTTTGTGACCGTTGTTTTGGACAGCAGACCAATTTGGATCGCCACCTGAAGAAGCACGAAGGAGAGGATGGTCAACCGGCCGCAGCTGACTCTCCGAGCTCAGACAACGAAGACCTGGTGACCGGAACTGCCAACCGTGAAGACGCGTATTTCGACGAAATCCGCTCCTTCATGGGCAAAGTAGCCTCGTACAACAACAACCTGAGCCAATTCGGTCTGGACAACAACAACTTCGGAGCCGTTCCCGACCCGAAGTACTTCGGGTTTCCACCTCATCCGAACTTCGGAGGACGGGATACGTCTCCGGTGACTTCCAGAGTGACAACGCCGCCAACCAAGTCCCATCTGTCCGAAAGGCTGAAGGACCTTCCATCAACCCCTTCTACGTCTTCGTCTCCTTCATTGTCCCCCAGGAGGAGCCCATTGACTGCGACACCAACAGCAGACAAACGGCAAAATCTAAACAACAACAACTCCCCAGCGTTTCAAATTGCTTCGTAA
Protein Sequence: MTRELLCVRRLDDHLISGHRYAANQYRCEKCSRTYAWRPSLLHHQTTKHGEVRRYPCENCPKLFSDPSNLQRHIRSHHVGARSHACTECGKTFATSSGLKQHTHIHSSVKPFQCEVCFKAYTQFSNLCRHKRMHADCRMQIKCAKCNQTFSTGTSLAKHKRFCDSTNPSPAGAMSQPHHGPHPSPNPFMLYPRPGLPFYHPGLLPTYGGALAAGSPLFNPHASFFGSPHVPFPLAPNHAHLSKDELEEKYRLSIDPYSSYRRSRSPSPSSSALSPVEPVTPSMNSMIHTNKVSPPAAEEAVSNERPSPARPPTSAKVQLDQPQDLSCNDGMRSPLSSRCQSPSDQPLDLRIGGKRRRSPSPDHSKEDRSDVWREAENHSPPSKKGNFVQIVKKETEEDEDDNKSDIKVEVEEDEKDNRKEPSERESSPKLKPADSPANSLNNSTGSSNNSVCSDIPSPPVYPRPVHPMFLESLYSHSQASAPFHPPPNPVFTSPSASKFSRSFPAFLGAIGGPTYSLASRGLQSLHHHLNGRGPPPKTFQEVLGGQSAAQGARVKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFRCPLCDRCFGQQTNLDRHLKKHEGEDGQPAAADSPSSDNEDLVTGTANREDAYFDEIRSFMGKVASYNNNLSQFGLDNNNFGAVPDPKYFGFPPHPNFGGRDTSPVTSRVTTPPTKSHLSERLKDLPSTPSTSSSPSLSPRRSPLTATPTADKRQNLNNNNSPAFQIAS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00930625;
90% Identity: iTF_00884501;
80% Identity: -