Scal007554.1
Basic Information
- Insect
- Stenodema calcarata
- Gene Symbol
- -
- Assembly
- GCA_963920205.1
- Location
- OY986049.1:17569101-17573997[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.4e-16 1.7e-12 48.0 0.0 4 50 54 99 51 119 0.81 2 2 3.1 7.2e+03 -2.1 0.0 5 18 273 286 270 288 0.82
Sequence Information
- Coding Sequence
- ATGTTAATGGCGTCAGATATCGACCCTTCCTCGATGCTGGAGGTTATATTTTCTGTTGCGGGGAAAGAACTTGCTGTGTCGTCAAGTACTAATAAGGGACACAACTCACATGAACCTGCCTCGCCACAAATGGCGAATGATCAAACAGTCTTGAGTGATGATTCGCCTTACAAAGTACCTCTAGATTTAGGCTGGAGAAGAGAAGTTGTTATTCGGGCCATCAGTTCACGTCGTCAGGCTGATGTATACTACTTATCCCCTAATGGAAGACGTTTTAGATCGATGAAGGAAGTGGCCATAGAAATTTTGGGCACCGAACTGACATCGAAAAATTTCACATTCTATCCTAAGATACTTGGCGTCAACGATCCCAAAAAAGAATTGGTTCGACCTGCTAAGGATTTTAGCGGGGGAAAAAGGGCGTCACTTCGTCATTCACTGGAGAAGACCGACAGTCCCGCCAGAAAGAAGGCCAAACTTACTCATAAACGCTCAAAAACGAAATTAAAGCCTGAGAATGTTGACTGCCAAGCTGATTTACCAGAAAATACCGGCGGATTGGAGTTTGCAGAGACTGGTGAAAAAGACGCGACGGGCTCATTGAATGTACTCACGTCGTTGAATCCCTCAACTGAAGACACCTCTGATATTGAGCCTACCTGCTCTAGCCCAAATACACCGACCTCTACCACCAGCGAAACCGAAAACTGCCCTAACCATGTTGCCTCTCAACGTTGTTTTTGTGATATGTGTTCCAAAGTGGACGAAAAATGTCGGTGTTGCTGTGATATACCAAGAGTTCGAGTTGTCAAGTCGAACTATCAGTGCATCACACTCCATCCTGGCTTCAAAAAGCTCATCCTCGACGGTGATGTGTTATCCATAGCAAGACATTTGCTGAGTGccaaaacgaaaaacaaaacaaagaaaaaccTCCTCAATTCCGACGATCCTTTACACATAACTTGGCGGTATATTGCATACAAGCAATTTGTTTCCTGGATTAATAGTTGCACCGCTATTGGGAGTAGGGCAGTTGTTACAATACCATCTTGTGTTGTCAAAGCCGTGAGGGAAAGGTTCCCTGAACGCATTAGAACTCATAGAGTATTATCCTTCACCACGTGA
- Protein Sequence
- MLMASDIDPSSMLEVIFSVAGKELAVSSSTNKGHNSHEPASPQMANDQTVLSDDSPYKVPLDLGWRREVVIRAISSRRQADVYYLSPNGRRFRSMKEVAIEILGTELTSKNFTFYPKILGVNDPKKELVRPAKDFSGGKRASLRHSLEKTDSPARKKAKLTHKRSKTKLKPENVDCQADLPENTGGLEFAETGEKDATGSLNVLTSLNPSTEDTSDIEPTCSSPNTPTSTTSETENCPNHVASQRCFCDMCSKVDEKCRCCCDIPRVRVVKSNYQCITLHPGFKKLILDGDVLSIARHLLSAKTKNKTKKNLLNSDDPLHITWRYIAYKQFVSWINSCTAIGSRAVVTIPSCVVKAVRERFPERIRTHRVLSFTT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -