Basic Information

Gene Symbol
stc
Assembly
GCA_964017025.1
Location
OZ024781.1:7449678-7454905[-]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 2 2.5e+04 -4.3 1.6 15 19 511 515 510 515 0.81
2 16 0.14 1.7e+03 -0.4 0.1 4 10 544 550 543 551 0.94
3 16 2.6e-06 0.033 14.7 11.3 4 18 561 575 559 576 0.94
4 16 2.9e-07 0.0035 17.8 16.0 1 18 612 629 612 630 0.94
5 16 0.56 6.9e+03 -2.3 0.6 1 5 639 643 639 648 0.83
6 16 0.78 9.7e+03 -2.8 1.0 6 10 658 662 657 662 0.90
7 16 1.4e-09 1.7e-05 25.2 14.0 1 19 668 686 668 686 0.97
8 16 0.47 5.8e+03 -2.1 1.4 5 10 715 720 715 720 0.96
9 16 0.0015 19 5.9 12.0 4 18 733 747 726 748 0.86
10 16 1.6 1.9e+04 -3.8 2.0 5 10 777 782 777 782 0.93
11 16 0.0075 93 3.6 12.4 1 11 788 798 788 810 0.88
12 16 1.9e-07 0.0023 18.3 19.5 1 19 815 833 815 833 0.98
13 16 0.36 4.5e+03 -1.7 0.6 5 10 861 866 859 866 0.95
14 16 2 2.5e+04 -8.3 11.3 10 19 880 890 869 890 0.71
15 16 4.8e-07 0.0059 17.0 14.0 1 16 926 941 926 952 0.86
16 16 3.8e-06 0.047 14.2 12.6 1 19 958 977 958 977 0.97

Sequence Information

Coding Sequence
ATGGCCACCTGGGACGGATCCGACCAGGCGggtccatccgacgatcccaACTTCTACCTCTTCGCGCACACGAGTAACGCGGCCGCGAATCCCCGAACCTGGGACTACTATTCCACAGCCGGAAACGGCGCGTACTCGCACGGTTCGATGGGCATCTATGCTCAAAACAATCTTCCGGACGTCGCTGTAACTCAGGGATATCAAAGTGCCACCTATCAGGATTCTCTCTTCGCTCCTGTTCACGACAATGCTCCCGCAATAGTCAACGACAGACGCTGTTTCTTCGAGAACAACCGACAATTGCAAAAACTTCCATCATTCAATTCGAGATATTCGGGTCACAAGCAAGAGGCCAGCTTGACCAAACAGTCGAACTTGCACGCCGGCGCCAGCGAGTTCGTGCCGACCGGAGGGATGAACAACTTGCATACAAGCCCGTCCGTCCCTGCGTACAACGAAACCGATACTCCGTACAATGATTTTCCTTCGGACAGCCCTCAGTCGACTTCTCATATATTCTTTAGTGACAATAGAAATCGCACCAATGACAGACGTTACGATAATCCGAAGAACAGTAATTCTAACAGAGGATTGTACAGAAGAGATCGTGTTCGTAACTACAACGTCCCGCGGGCTAACGATTCGTCGATGATAGCTCAGGACACCTCGTCGGGTAACATACAACCATCGGAAGATAATTCGTACAGAGCCGGCGCTAAGGGTCAAAGACCCAGGAATCAAGGTAGATTTCGAACCGATAGATATCCGAATACTCGTCGGCCGCACGACAAACCTCGCTCGGACAGAGGAAAAATGACTGTCGATACGTGGCAAAATCCTATCGAAGTATCGAGGGACAATGCAACGAGCAACGACGAGCCTAGGGAAAATTCAAATCAGACCGCTTACAACAACAAAGGGAAATGGCCGAGATTCGAGAAGAAAGGTCATGAAAGATACCCGGCTAATCGTCAGCAGGCCGAGAAATCGCATGCAGGCCCTAACGATTACGAAGAACAGCAGAGCCTCTCCGAGCCTCAGACTCCGGGACATTCGTTGTTCGCGTCTAGAAAGGAGAACACTCACAGTCGCGAGAGCGATAGAAACTTGTACAGAAATGATAGGGGGCGAGCCCAGCCGAGGGACGGTTCGGTAAATTTCGACGGTAGCGGACATTCTTATTACGATTACGAGGGACACGGAGATAGTTACGATAGATCCAGAGACGATAGCAAAAGATCGAGAGATCCGCGGGACGAGGACTCGCAAAGTTGGAGGCAGAAGGATAAAATACCTGTCAAAGGGGGAATGCAGAAGAAGAATACCAAGAAGATCGAATTCGATGACGACGCGAGCCAGAGGGAGCGATTAACCGAGCAATTGAACCAGGGCCAATTGGAGTGTCTCATTTGTTGCGACTACATAAGGCAAAACGATCCGGTTTGGTCCTGCAATAACTGCTATCACGTGCTTCACTTGAAATGCTTGAAGAAGTGGGCGCATTCGTCACAGGGTGaaAACGGGTGGCGTTGTCCAGCCTGCCAAAACGTGAGTCTCACGATTCCTGAAGTTTACTACTGCTTCTGCGGCAAGGCTCGTATTCCCGAGTGGAATCGTCGCGACGTGGCTCACTCGTGCGGCGAAATTTGCGGACGTTTGAGAGCGAAGAATAATTGTGTGCACAAGTGCACGCTTCTCTGCCATCCGGGCTCGTGTCCCGAATGCATCGCTATGGTCACGAGGCACTGCGGATGCGGCAAGACTTCGCAGAGCCTCAAGTGCAGCACATCAACGTTAGTCGTTTGTGAGGCGATATGCGAGAAGACGCTCAATTGCAACATTCACACATGCGAAAAAACATGTCATCACGGAGACTGTGGGCCTTGCGAAAAAACATTGCATCAagaTTGTTACTGTGGCAAACACGAGCGCGACGTGACTTGCACGGCCGACTTACCGGCGACCTACAGCTGCGAGGAAATTTGCGACAAATTTCTCGAATGCGGCAATCATCGATGCAAAGAATTGTGTCATCCGGGTAACTGCGGCGCTTGTACTTTGCAGCCCGCTATGGTCACACACTGCTGCTGTGGCCAAACTCCTCTAACCGTTAAGAGGGAAAGTTGTCTCGATCCTACTCCGACCTGCGAGAAAATTTGCGCGAAGAGATTAAAGTGCGGTCAGCCGAGCGATCCGCATACCTGCAAATTCAATTGTCATCCCGACGACTGTCCGGAATGCGAATTGACCACGAAAGTTCGTTGTCGCTGTGGCAACATGGATCGAGAGATCGCTTGCAAGGAGCTTCGAACAAAGGCCGACGATGCTCGATGCGAGAAGAAATGCACGAAGAAACGATCTTGCGGAAAGCATAAATGCAATCAGCCTTGTTGCATCGATATCGAGCACATATGCCCGATGCCCTGTTCGAAAACCCTGAATTGCGGTAGACACAGGTGCCAGCTGTGTTGCCACAAGGGAAGATGCCAGCCTTGTCAGCAAATGAGTTTCGATGAGTTGCACTGCGAGTGCGGAACGTCTGTAATTTATCCACCGGTTCCTTGCGGCACGAGGCGACCTACTTGTAATCGTCCTTGCACACGTCAACACTCCTGCGGACACGAGGTTCTTCATAACTGCCACAGCGATCCGACCTGCCCGCCGTGCACCGTGCTCACCCAGAGATGGTGTTACGGCAAACACGAGCTCAGGAAAGCTGTGCCCTGTCATGTTAACGAAATATCCTGCGGTCTGCCGTGTAACAAACCTATTTCGTGCGGAAGACACAAGTGTATTACACTTTGCCATCCTGGGCCATGCGAGAAATCCGGTCAAGCTTGCGTACAGCCCTGCACCGTGCCGCGGGACATCTGTGGTCATATCTGCGCTGCTCCGTGCCACGAGGGCAAGTGTCCTGATCTGCCCTGCAAAGAAACAGTCAAGGTTACTTGTACGTGCGGTAACAGAAGCATGACCAGGCCGTGTGCAGAAAATTCCCGTGACTTCCAGAGGATCGCCAGCGGCATATTAGCGAGTAAGATGGCAGACATGCAGCTGGGTCACTCGGTGGATTTAGAGGAAGTGTTCGGTCAGGGTGCGAAGAAGCAGAATCACCTGAAGACTCTCGAGTGTAACGACGAATGCAAGATTATCGCGAGAAACACGAGAATCGCGTTGGGTTTGCAGATAGTGAATCCTGACGTCAGTGGCAAATTGATGCCGAGATACAGTGAATCCATGAAGCAGTGGGCCAAGAAGGATCCACACTTTTGTCAGATGGTCCACGACAAGCTCACCGAATTGGTACAACTGGCGAAAACTTCGAAGCAAAAATCGCGCAGCTATTCCTTTGATAGCATGAACAGGGACAAGCGTAATTTTATACACGAGAGCTGCGAACACTTCGGATGCGAAAGCCAGGCGTACGATAAAGAACCCAAGCGAAATGTCGTGGCCACCGCTGTTAAAGACAAGtGTTGGTTGCCGAGTTACAGCTTATTGGAAATAGTGCAACGAGAAAATGGTCAGCGGAAAGTTCCGCGACCGATGCTCAATTCATCAAAACCCAAGTCTACATTAcgtttatCGGAAGTGCTATCCTCAACTGCCAGGTCGAGTCAGAAGCTCCAGCCGTCAGCTTCTACCTCGAAGTCTCCGGAGCCCGAAATAGATTACTTCGATTTTCCAAACGGAAAAGCCGGCAAGTGGGGCAACGCGTAA
Protein Sequence
MATWDGSDQAGPSDDPNFYLFAHTSNAAANPRTWDYYSTAGNGAYSHGSMGIYAQNNLPDVAVTQGYQSATYQDSLFAPVHDNAPAIVNDRRCFFENNRQLQKLPSFNSRYSGHKQEASLTKQSNLHAGASEFVPTGGMNNLHTSPSVPAYNETDTPYNDFPSDSPQSTSHIFFSDNRNRTNDRRYDNPKNSNSNRGLYRRDRVRNYNVPRANDSSMIAQDTSSGNIQPSEDNSYRAGAKGQRPRNQGRFRTDRYPNTRRPHDKPRSDRGKMTVDTWQNPIEVSRDNATSNDEPRENSNQTAYNNKGKWPRFEKKGHERYPANRQQAEKSHAGPNDYEEQQSLSEPQTPGHSLFASRKENTHSRESDRNLYRNDRGRAQPRDGSVNFDGSGHSYYDYEGHGDSYDRSRDDSKRSRDPRDEDSQSWRQKDKIPVKGGMQKKNTKKIEFDDDASQRERLTEQLNQGQLECLICCDYIRQNDPVWSCNNCYHVLHLKCLKKWAHSSQGENGWRCPACQNVSLTIPEVYYCFCGKARIPEWNRRDVAHSCGEICGRLRAKNNCVHKCTLLCHPGSCPECIAMVTRHCGCGKTSQSLKCSTSTLVVCEAICEKTLNCNIHTCEKTCHHGDCGPCEKTLHQDCYCGKHERDVTCTADLPATYSCEEICDKFLECGNHRCKELCHPGNCGACTLQPAMVTHCCCGQTPLTVKRESCLDPTPTCEKICAKRLKCGQPSDPHTCKFNCHPDDCPECELTTKVRCRCGNMDREIACKELRTKADDARCEKKCTKKRSCGKHKCNQPCCIDIEHICPMPCSKTLNCGRHRCQLCCHKGRCQPCQQMSFDELHCECGTSVIYPPVPCGTRRPTCNRPCTRQHSCGHEVLHNCHSDPTCPPCTVLTQRWCYGKHELRKAVPCHVNEISCGLPCNKPISCGRHKCITLCHPGPCEKSGQACVQPCTVPRDICGHICAAPCHEGKCPDLPCKETVKVTCTCGNRSMTRPCAENSRDFQRIASGILASKMADMQLGHSVDLEEVFGQGAKKQNHLKTLECNDECKIIARNTRIALGLQIVNPDVSGKLMPRYSESMKQWAKKDPHFCQMVHDKLTELVQLAKTSKQKSRSYSFDSMNRDKRNFIHESCEHFGCESQAYDKEPKRNVVATAVKDKCWLPSYSLLEIVQRENGQRKVPRPMLNSSKPKSTLRLSEVLSSTARSSQKLQPSASTSKSPEPEIDYFDFPNGKAGKWGNA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00059859;
80% Identity
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