Basic Information

Gene Symbol
stc
Assembly
GCA_958510785.1
Location
OY294016.1:2251489-2256686[+]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 2 2.3e+04 -4.3 1.6 15 19 513 517 512 517 0.81
2 16 0.14 1.6e+03 -0.4 0.1 4 10 546 552 545 553 0.94
3 16 2.7e-06 0.03 14.7 11.3 4 18 563 577 561 578 0.94
4 16 2.9e-07 0.0033 17.8 16.0 1 18 614 631 614 632 0.94
5 16 0.56 6.4e+03 -2.3 0.6 1 5 641 645 641 650 0.83
6 16 1 1.2e+04 -3.2 1.5 6 10 660 664 659 664 0.89
7 16 1.4e-09 1.6e-05 25.1 14.6 1 19 670 688 670 688 0.97
8 16 0.47 5.4e+03 -2.1 1.4 5 10 717 722 717 722 0.96
9 16 0.0015 17 5.9 12.0 4 18 735 749 728 750 0.86
10 16 1.6 1.8e+04 -3.8 2.0 5 10 779 784 779 784 0.93
11 16 0.0076 86 3.6 12.4 1 11 790 800 790 812 0.88
12 16 1.9e-07 0.0022 18.3 19.5 1 19 817 835 817 835 0.98
13 16 0.4 4.6e+03 -1.9 0.7 5 10 863 868 862 868 0.94
14 16 2 2.3e+04 -7.0 9.9 10 19 882 892 874 892 0.69
15 16 4e-07 0.0046 17.3 13.8 1 16 928 943 928 954 0.86
16 16 3.8e-06 0.043 14.2 12.6 1 19 960 979 960 979 0.97

Sequence Information

Coding Sequence
ATGGCCACCTGGGACGGATCCGACCAGGCGGGTCCATCCGATGATCCAAACTTCTACCTCTTCGCGCACGCGAGTAACGCGGCCGCTAATCCCCGAACCTGGGACTACTATTCCACAGCCGGAAACGGCTCATACTCGCACGGTTCGATGGGCATCTACGCTCAAAACAATCTTCCGAACGTCGCTGCCACGCAGGGATATCAAAGTGCCACCTATCAGGATTCTCTCTTCGCTCCGGTCCACGACAATGCTACCGCAATCGTCAACGATAGACCCTGCTTCTTCGAGAACAACCGACAATTGCAAAAACTTCCGTCATTCAATTCGCGATATTCGGGCCACAAGCAAGAGGCCGGCTTGACCAAACAGTCGAACTTGCACGCCGGCGCCAGCGAGTTTGTGCCGACGGGAGGGATGAACAATTTGCATAAAAGCCCGTCCATCCCTGCGTACAACGAAACCGATACTCCGTACAATGATTTTCCTTCGGACAGTCCACAGTCGACTTCTCATATTTTCTTCAGTGACAATAGAAATCGCACCAACGACAGACGTTACGATAATACGAAGAACAGTAATTCTAACAGAGGTTTGTACAGAAGGGATCGTGTTCGGAACTACCACGTCCCGCGGGCTAACGATTCGCCGATGATAGCTCAGGACACCTCGTCGGGTAACATGCAACAGTCCGAAGACAATTCGTACAGAGCCGGTCCCAAGGGTCAAAGACCCAGGAATCAAGGCAGATTTCGAATCGATAGATATCCGAATACTCGTCGGCCGCAGCACAACGAGAAACCTCGCTCGGACAGAGGAAAAATGACGGTCGATACGTGGCAAAATCCTGTCGAAGTATCTAGGGACAACGCGTCGAGCAACGACGAGCCTAGAGAAAATTCAAATCAGACCGCTTACAACAACAAAGGGAAATGGCCGAGGTTCGAGAAGAAAGGTCACGAAAGATACGCGGCTAATCGTCAGCAAGCCGAGAAATCGCATGTTGGCCATAACGATTACGAAGAACAGCAGAGCCTCTTCGAACCTCAGACTCCGGGAAATTCGTTGTCGGCGCCTAGAAAGGAGAACACTCACAGTCGCGAGGGCGATAGAAACTTGTACAGAAATGATAGGGGACGAGCAAAACCGAGGGACGGTTCGGTAAATTTCGACGGTAGCGGACATTCTTATTACGATTACGAGGGACACGGAGATAGTTACGATAGATCCAGAGACGATAGCAAAAGATCTAGAGATCCGCGGGACGAGGACTCGCAAAATTGGAGGCAGAAGGATAAAATACCTATCAAAGGGGGAATGCAGAAGAAGAATACCAAGAAGATCGAATTCGATGACGACGCCAGCCAGAGGGAGCGATTAACCGAGCAATTGAACCAGGGCCAATTGGAGTGTCTCATTTGTTGCGACTACATAAGGCAAAACGATCCGGTTTGGTCCTGCAATAACTGCTATCACGTGCTTCACTTGAAATGCTTGAAGAAGTGGGCGCATTCGTCACAGGGTGaaAATGGTTGGCGTTGTCCAGCCTGCCAAAACGTGAGTCTCACGATTCCCGAAATTTACTACTGTTTTTGCGGCAAGGCTCGTATTCCCGAGTGGAATCGTCGTGACGTGGCTCACTCGTGCGGTGAAATTTGCGGACGTTTGAGAGCGAAGAACAATTGCGTGCACAAGTGCACGCTGCTCTGCCATCCGGGCTCGTGTCCCGAATGCATCGCCATGGTAACGAGGCACTGCGGATGCGGCAAGACTTCGCAGAGCCTCAAGTGCAGCACATCAACGCTGGTCGTTTGCGAGGCAATATGCGAGAAGACCCTCAATTGCAACATTCACACATGCGAAAAAACATGTCATCACGGAGACTGTGGGCCTTGCGAAAAAACATTGCATCAAGATTGTTACTGCGGCAAACACGAGCGCGACGTGACTTGTACGGCCGATTTACCGGCGACCTACAGCTGCGAGGAAACTTGCGACAAATTTCTCGAATGCGGCAATCATCGATGCAAAGAATTATGTCATCCGGGTAGCTGCGGCTCTTGTACTTTGCAGCCCGCTATGGTAACGCACTGCTGCTGTGGCCAAACTCCTCTGACCGTTAAGAGGGAAAGTTGTCTCGATCCTACGCCGACATGCgagaaaatttgttcgaaGAGATTAAAGTGCGGTCAGCCGAGCGATCCGCATACTTGCAAATTCAACTGTCATCCCGACGACTGTCCGGAATGCGAATTGACCACGAAAGTTCGTTGTCGCTGTGGCAACATGGATCGAGAGATCGCTTGCAAGGAGCTTCGAACAAAGGCCGACGATGCTCGATGCGAGAAGAAATGCACGAAGAAACGATCTTGCGGAAAGCATAAATGCAATCAGCCTTGTTGCATCGATATCGAGCACATATGCCCGATGCCCTGTTCGAAAACCCTCAATTGCGGTAGACACAGGTGCCAGCTGTGTTGCCACAAGGGGAGATGCCAGCCTTGTCAGCAAATGAGTTTCGATGAATTGCACTGCGAGTGCGGAACGTCTGTAATTTATCCACCGGTTCCTTGCGGCACGAGGCGACCTACTTGCAATCGTCCCTGCACCCGTCAGCACGCCTGCGGTCACGAGGTTCTTCACAACTGCCACAGCGATCCGACCTGCCCGCCGTGCACAGTCCTCACGCAGAGATGGTGTTACGGCAAACACGAGCTCAGAAAAGCTGTGCCCTGTCACGTTAACGAAATATCCTGCGGTCTGCCGTGCAACAAACCTATTTCGTGCGGAAGGCATAAGTGTATTACACTTTGCCATCCTGGGCCATGCGAGAAAGCCGGTCAAGCTTGCGTACAGCCGTGCACCGTGCCGCGGGACATCTGCGGCCATATCTGCGCCGCTCCGTGCCACGAGGGCAAGTGTCCTGATCTGCCCTGCAAAGAAACAGTCAAGGTTACTTGTACGTGCGGTAACAGAAGCATGACCAGGCCGTGTGCGGAAAATTCCCGAGATTTCCAGAGGATCGCCAGCGGCATATTAGCGAGTAAGATGGCAGACATGCAGCTGGGTCACTCGGTGGATTTGGAGGAAGTGTTCGGTCAGGGTGCGAAGAAGCAGAATCACCTGAAGACTCTCGAGTGCAACGACGAATGCAAGATTATCGCGAGAAACACGAGAATCGCGTTGGGTCTACAGATAGTGAATCCCGACGTCAGCGGCAAATTGATGCCGAGATACAGTGAATCCATGAAGCAGTGGGCCAAGAAGGATCCACACTTTTGTCAGATGGTTCACGAGAAGCTCACCGAATTGGTACAGTTGGCGAAAACTTCGAAGCAAAAATCGCGCAGCTATTCCTTCGACAGCATGAACAGGGACAAGCGTAATTTTATACACGAGAGTTGCGAGCACTTCGGATGCGAGAGCCAGGCGTACGACAAAGAACCCAAGCGGAATGTCGTGGCCACCGCGGTTAAAGATAAGTGTTGGATGCCGAGTTACAGCTTATTGGAAATAGTGCAACGAGAAAATGGTCAGCGGAAAGTTCCGCGACCGATGCTCAATTCATCAAAACCCAAGTCTACATTAcgtttgTCGGAAGTGCTATCCTCAACTGCCAGGTCGAGTCAGAAGCTCCAGCCGTCAGCTTCCACCTCGAAGTCTCCGGAGCCCGAAATAGATTATTTCGATTTTCCAAACGGAAAAGCCGGCAAGTGGGGCAACGCGTAA
Protein Sequence
MATWDGSDQAGPSDDPNFYLFAHASNAAANPRTWDYYSTAGNGSYSHGSMGIYAQNNLPNVAATQGYQSATYQDSLFAPVHDNATAIVNDRPCFFENNRQLQKLPSFNSRYSGHKQEAGLTKQSNLHAGASEFVPTGGMNNLHKSPSIPAYNETDTPYNDFPSDSPQSTSHIFFSDNRNRTNDRRYDNTKNSNSNRGLYRRDRVRNYHVPRANDSPMIAQDTSSGNMQQSEDNSYRAGPKGQRPRNQGRFRIDRYPNTRRPQHNEKPRSDRGKMTVDTWQNPVEVSRDNASSNDEPRENSNQTAYNNKGKWPRFEKKGHERYAANRQQAEKSHVGHNDYEEQQSLFEPQTPGNSLSAPRKENTHSREGDRNLYRNDRGRAKPRDGSVNFDGSGHSYYDYEGHGDSYDRSRDDSKRSRDPRDEDSQNWRQKDKIPIKGGMQKKNTKKIEFDDDASQRERLTEQLNQGQLECLICCDYIRQNDPVWSCNNCYHVLHLKCLKKWAHSSQGENGWRCPACQNVSLTIPEIYYCFCGKARIPEWNRRDVAHSCGEICGRLRAKNNCVHKCTLLCHPGSCPECIAMVTRHCGCGKTSQSLKCSTSTLVVCEAICEKTLNCNIHTCEKTCHHGDCGPCEKTLHQDCYCGKHERDVTCTADLPATYSCEETCDKFLECGNHRCKELCHPGSCGSCTLQPAMVTHCCCGQTPLTVKRESCLDPTPTCEKICSKRLKCGQPSDPHTCKFNCHPDDCPECELTTKVRCRCGNMDREIACKELRTKADDARCEKKCTKKRSCGKHKCNQPCCIDIEHICPMPCSKTLNCGRHRCQLCCHKGRCQPCQQMSFDELHCECGTSVIYPPVPCGTRRPTCNRPCTRQHACGHEVLHNCHSDPTCPPCTVLTQRWCYGKHELRKAVPCHVNEISCGLPCNKPISCGRHKCITLCHPGPCEKAGQACVQPCTVPRDICGHICAAPCHEGKCPDLPCKETVKVTCTCGNRSMTRPCAENSRDFQRIASGILASKMADMQLGHSVDLEEVFGQGAKKQNHLKTLECNDECKIIARNTRIALGLQIVNPDVSGKLMPRYSESMKQWAKKDPHFCQMVHEKLTELVQLAKTSKQKSRSYSFDSMNRDKRNFIHESCEHFGCESQAYDKEPKRNVVATAVKDKCWMPSYSLLEIVQRENGQRKVPRPMLNSSKPKSTLRLSEVLSSTARSSQKLQPSASTSKSPEPEIDYFDFPNGKAGKWGNA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00059859;
90% Identity
iTF_01365081;
80% Identity
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