Scul009912.1
Basic Information
- Insect
- Stenichneumon culpator
- Gene Symbol
- -
- Assembly
- GCA_964017025.1
- Location
- OZ024772.1:14325042-14329187[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.19 19 6.4 2.6 1 23 257 280 257 280 0.92 2 16 0.011 1.1 10.3 0.2 5 23 287 306 285 306 0.94 3 16 0.011 1.1 10.3 0.1 1 19 414 432 414 435 0.91 4 16 0.0068 0.66 11.0 1.0 1 23 442 465 442 465 0.97 5 16 1.9 1.9e+02 3.3 0.5 1 12 475 486 475 498 0.79 6 16 2.9 2.8e+02 2.7 0.2 2 19 532 549 531 551 0.81 7 16 0.73 71 4.6 0.3 2 23 560 582 559 582 0.91 8 16 0.0058 0.56 11.2 0.0 2 19 648 665 647 667 0.94 9 16 0.1 9.9 7.3 1.8 1 23 675 698 675 698 0.92 10 16 0.2 19 6.4 2.6 2 23 708 730 707 730 0.95 11 16 2.8 2.7e+02 2.8 0.0 2 20 831 849 830 851 0.93 12 16 0.45 43 5.3 0.4 1 21 858 878 858 880 0.72 13 16 0.58 56 4.9 1.2 1 22 888 909 888 911 0.86 14 16 0.0024 0.23 12.4 0.2 1 23 999 1022 999 1022 0.96 15 16 0.00048 0.046 14.6 0.3 2 23 1052 1074 1051 1074 0.97 16 16 0.025 2.4 9.2 0.1 2 23 1180 1202 1179 1202 0.93
Sequence Information
- Coding Sequence
- ATGGCTCCAGAAAGTAATATAAACGAAACAACGGTTCCGGAGAGTACAATAACTGGAACAAAGGCTCCAGAGAAGAATATACCCGAAATAAAGTCTCCAAAGGATAATACTTCCAAAACGCAAGGTTCACAAACCAATGCCACCGCTCCCTCGATAGATTTTCAAAACCATATCAATGATGAGAATAAGAAAAGTGATGAGTCATCGAGGCTAGATGACGAGACGATATTCCCTAATGAGAAAGAAACATCCTCGCACGAAGTCACTGTCCAATCTGATGTACCCGTTAACGACCCGAGTTCTTCATCCTTCGTGAAGAGGCGTGTGGAACTGAACGAAGCGGAAACTCTACTGAGCGATGCAACAACGACTGTACCGGCAGAAAAGAACGAgaatgaaaaatctcccgaCAGCTCGCGACATCCCCAAGAGGTTGAGAAGTCTGATGAAAATAGTTTCATTGAAAGTAACTCAGCAAACGTTGCAGGAGAATTAAATCGCGACGATGCTGCCACAGGTGGCAACACGATACAAATTGATCGAGAAGCAGAACTGAACGCCTTACATTCGTGCAGGGATTGTTACGTACCACTGACGCGACTGAACGTCAATAGAAACAAGAAACGACGACGAGGCCCAGCAAAGAGAACTAAGACTCCTTCTCCCGGAACTTTGTTTACTCGTAAACCCGTGGATATCGCACCTCTGATCGATCTCTCGGTGGCGAAACCGAGGTATCGTAAAATCGTCAGTGGGCCGTCGACACTCTTTCCGTGTGAGCACTGCACCGAATTTTTCAACACTCATGCCAGCAGACTGATGCACATCGAATTGCGTCACACCGCTATTCCATCGATAGTTTGCGACAAAACTTTTTCAACTCGACAGGCTATACTGCGTCATTATCGTGAGCGTCACTTCGTGTACACTGAAAACAAGACTTTTTGTGTTTGCGGTATGGAACTCGTTGGGCAGACAGCGATTCACCGACATTTTTATCAATACGCTATCAAAGTCCTCGTGGTAAAAAATGTACCTGAGGCTTCGCACACCGCATGCAATCCGTTGCCAACGAATTTTGGTTGCGACAAGTGCGGCGCAACGTTTTGGTTGAAAACATGCTTGCAGTATCATTGGACTCTCGATTGCGAACGTTCGAAGGCCGTCGTATCGAAAGACATCGCTGCAACGACCGCTGTTCGTAAACGTTACAAACGACCTCACAAGGAGATCCGATCTCATATCTGCACCGTGTGCGACACAGTGTTCTCAAGCGCCGAGCAACAAGCCAGGCACGAAGCAAAGTACTCGCGTCGCGAGAGACACCAGTGCAGGCTCTGCGGAACTGTTTTCAACGGAACCCGACTTTTGAGCGGTCACATTCAGACGACCCACAAACGCGATCCTGCGAGGCGTTATCCTTACTACTGTCGTATTTGCGATCAAGGCTTCACCATGGTGGCGGCGGAACGTATTCACCGAATGCATTTCCATCGCGACGGCGTTTCATTCGTCGACGAAGTGACCAGCGACTCGGATCTCGACGAACTCCCAATGACCGACTCGGACGTGTCCGACGACGAAACTACCAAGGAATGCAATGTTTGCGGTCACGAATTCATGAGCGGTCAGCGCTTCATCAATCATCTTGTTTATTACACCAGGAGCGAGATAATCGAGTGCAACATATGTCTCGAAGAGTTCGCCGGCCAGTACCAGGCCCATCGTCACAACAAGCTCGTTCATTATACCAGCGAATCGCGAGATGCTTTCACGCACTACTGCACAATTTGTCATGAGGGTTTCATGTGGAGTACGCATTTGCACGCTCATCTGTGCCACGTCCACGGAATACCCACTATCGAGGCTCAATGCATGATAAACCTGTCTGACTCTAGGAGAAACAACAACCAGAAAGTCGGCCTTCTCAATGTCGCCGATACTTGCAAGATCTGCGACATCACTTTTCCATCTCCGGTACTTCTGGCTGCTCATGAAATCGAGAACCTGAACGACGGCGAATTCGTCTGCAACAAGTGCTCGAGGAGATGTCGAACGGCATCGATACTCCTCGATCATCTGTCTCTCAATCACTCAAGTACGATTATCCAGGACGGAGTCAAGTGTCGCCGATGCAACGAGAGATTCCAGACACGGTCGGCTTGGGTGTCGCACGTCAAACACTTTCACTTTTGCAAAGAGCCGTCGGAATTCTACTTCGAGAAGAACATAACGTCTTCGGAAAAGTTTATGCGCAGCTTGAGATACGAGCTCAACGTTCCAACCAACAGTTCGATAAGCAGCGGACTGGCGAGTTTCAGAATAAGAAGCTCTTTCGGTGATTCCTCGCACACGCCAGAGATTATCGTCCCCGACAAAAATATCCTTGAAAACGCTGATGCCCGAAACTTCATTAAAATCGAGGCAACTCCAAGCAACGAGTGTCGTAACAACGGACAAATTGTCGGGTCAGACCCAGAGACAGCTTGGAAGTGCGCGATCTGCTTAGTAAACTTACGCGGACCGGCCGAACTCGCGAGGCACATGGCACTGTTCTCGGACGAGGGCCAATACATGTGCGAACTTTGCGGCAGAAGATTTGCCTGGTTAAGTATCTATGAGGAACACAAGAAGAAACATTATCGCAACGATGTCGACAAATTCTTCTGTCCAACGTGCAACGAGGGATTCGAGACTCTGCAGTCTAAGACATCGCACGAGGCTCATCTGCACAAAAGATCACCCGGACTCCATCGAAATGAAGACCAAAGGACCGATAACTCACAACAATTGAAGTCACCGAATAAATCATTGCCTCATCCAAAACTTCCTTCGATCGTTTCGTTCTTTCAATCTGGTTCGGCAAACGAGCAACGATCGAATCGGTACGTTCTGGGTCTTCCTGATCAAAGAAAACGCGAAGAACAACGCCAGGAGACAAGCTCTTGGCCTCGGCTTCATACGGAAATCTTCGAGGACGAATTGTCGATGAGTTACCAATGTCCCGATTGTCAAGAAAAATATCCTACGCTCGAAGAAATGCACGAACATCTCACGATCGCTCACAACATGAAACAAGATCCATCTGAAGATGCACTTGCCAATCTGCCTGTCGATTCGCCCGAGGTTTCGAGCATTTTCATTGATTCCGTGAAGTGTGAAATTTGCGATATGCATTTTGTGAGCGAGAATCTCTTGATCGTACACAGAAACACGATTCATTCGACGTCTCCTGTTGCAGTCCGAAAAATCCGCAACACTCTCATTACCGTTGAGAACGATTCATCGAGCAAGCGTCTCTGTTCCACATACGATCATTCTTACGAATCGAGAAAAACTTGCAAACTGCTACCAAACGGGCAAGTCCGTAAAAGGCGCTACCAAATAAGAAATAGTCCGGATCAGTTGACTAAATCTTACATGCCTTGGGAACAAGCTAGTTCCAATAACCCACGGTCCGTTGGCGAAGTTACCTCGACGACAGGCTTGCGCGATAGCGTCAACAGTACTTCAGAGAATATCCAAACGCAAGTCGTTCGTTGCGAAATCTGCGACATAGTGTTCATGAACAAAAAGGTTCTCCGAGGTCACGAGATGAACATTCACGGTTTGATCGTCGATGATAATCAGCCGAGCGATGATTCGTCGGAGGAAGAGAGCAGTGGCTCTTCGTCGGCTGCCATACACCAGCTGAGTCTCTTCGTCGGGAAGTTACCGATCGCGCCGAAGGACGTTGACGCAACCGCGATCAGCATGGACTTCGAGAGCGTGATGATACCTGTAACGACTTACGACTTCGATATCACGCCAACAAAAACCGAGAAGAGCGCCAAAACGCCGAAACCTATCGAAGACTCCTTCTCGAACTCCAACGTCGATGGCTTACCAGCTGGAAACTACAAAGTCTCCCAACTGAAGGTTCGACCGTTCGCAGAGATCGTCAAAAAACTGCGATATCAAAACGTCCAAAAACTGTCAAATGACGAACACGTGGAACGCACGGAGTCTGCGGCCAAGCGAACTAAAAAAGTATTCGATCCCGTTGCGTATCGTGAACTCTGCGAGCAACACGACTTGGCACCACCTAGCTCCATGAAATCCAGGGTGAAATTTCCGGCGAGAGAACCCGGAAATACTTGTACGTGA
- Protein Sequence
- MAPESNINETTVPESTITGTKAPEKNIPEIKSPKDNTSKTQGSQTNATAPSIDFQNHINDENKKSDESSRLDDETIFPNEKETSSHEVTVQSDVPVNDPSSSSFVKRRVELNEAETLLSDATTTVPAEKNENEKSPDSSRHPQEVEKSDENSFIESNSANVAGELNRDDAATGGNTIQIDREAELNALHSCRDCYVPLTRLNVNRNKKRRRGPAKRTKTPSPGTLFTRKPVDIAPLIDLSVAKPRYRKIVSGPSTLFPCEHCTEFFNTHASRLMHIELRHTAIPSIVCDKTFSTRQAILRHYRERHFVYTENKTFCVCGMELVGQTAIHRHFYQYAIKVLVVKNVPEASHTACNPLPTNFGCDKCGATFWLKTCLQYHWTLDCERSKAVVSKDIAATTAVRKRYKRPHKEIRSHICTVCDTVFSSAEQQARHEAKYSRRERHQCRLCGTVFNGTRLLSGHIQTTHKRDPARRYPYYCRICDQGFTMVAAERIHRMHFHRDGVSFVDEVTSDSDLDELPMTDSDVSDDETTKECNVCGHEFMSGQRFINHLVYYTRSEIIECNICLEEFAGQYQAHRHNKLVHYTSESRDAFTHYCTICHEGFMWSTHLHAHLCHVHGIPTIEAQCMINLSDSRRNNNQKVGLLNVADTCKICDITFPSPVLLAAHEIENLNDGEFVCNKCSRRCRTASILLDHLSLNHSSTIIQDGVKCRRCNERFQTRSAWVSHVKHFHFCKEPSEFYFEKNITSSEKFMRSLRYELNVPTNSSISSGLASFRIRSSFGDSSHTPEIIVPDKNILENADARNFIKIEATPSNECRNNGQIVGSDPETAWKCAICLVNLRGPAELARHMALFSDEGQYMCELCGRRFAWLSIYEEHKKKHYRNDVDKFFCPTCNEGFETLQSKTSHEAHLHKRSPGLHRNEDQRTDNSQQLKSPNKSLPHPKLPSIVSFFQSGSANEQRSNRYVLGLPDQRKREEQRQETSSWPRLHTEIFEDELSMSYQCPDCQEKYPTLEEMHEHLTIAHNMKQDPSEDALANLPVDSPEVSSIFIDSVKCEICDMHFVSENLLIVHRNTIHSTSPVAVRKIRNTLITVENDSSSKRLCSTYDHSYESRKTCKLLPNGQVRKRRYQIRNSPDQLTKSYMPWEQASSNNPRSVGEVTSTTGLRDSVNSTSENIQTQVVRCEICDIVFMNKKVLRGHEMNIHGLIVDDNQPSDDSSEEESSGSSSAAIHQLSLFVGKLPIAPKDVDATAISMDFESVMIPVTTYDFDITPTKTEKSAKTPKPIEDSFSNSNVDGLPAGNYKVSQLKVRPFAEIVKKLRYQNVQKLSNDEHVERTESAAKRTKKVFDPVAYRELCEQHDLAPPSSMKSRVKFPAREPGNTCT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00059743;
- 90% Identity
- -
- 80% Identity
- -