Aarm012332.1
Basic Information
- Insect
- Amblyteles armatorius
- Gene Symbol
- -
- Assembly
- GCA_933228735.2
- Location
- OW121693.1:5128424-5132605[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.035 2.4 8.8 1.9 1 23 287 310 287 310 0.92 2 17 0.0038 0.26 11.8 0.3 5 23 317 336 315 336 0.95 3 17 2 1.4e+02 3.2 1.2 1 20 390 409 390 411 0.85 4 17 0.015 1 9.9 0.2 1 19 444 462 444 465 0.91 5 17 0.0019 0.13 12.7 1.0 1 23 472 495 472 495 0.97 6 17 1.2 83 3.9 0.9 1 22 505 526 505 528 0.78 7 17 0.66 45 4.8 0.2 2 19 562 579 562 581 0.84 8 17 2.1 1.4e+02 3.2 0.2 2 23 590 612 589 612 0.91 9 17 0.0071 0.49 10.9 0.0 2 19 678 695 677 697 0.94 10 17 0.1 7.2 7.3 1.8 1 23 705 728 705 728 0.92 11 17 0.24 16 6.2 1.7 2 23 738 760 737 760 0.95 12 17 1.2 83 3.9 0.0 2 20 861 879 860 881 0.94 13 17 0.46 32 5.3 0.4 1 21 888 908 888 910 0.72 14 17 0.35 24 5.6 1.0 1 22 918 939 918 941 0.86 15 17 0.0037 0.25 11.8 0.2 1 23 1029 1052 1029 1052 0.96 16 17 0.0078 0.53 10.8 0.2 2 23 1114 1136 1113 1136 0.97 17 17 0.44 30 5.3 0.1 2 21 1242 1261 1241 1264 0.88
Sequence Information
- Coding Sequence
- atGGTAAGGAGGAGCGAAGCAAGAGCGGCAGAAAATATCAAAGACTGTACAAAAGTACCGGAGAACAATGAGAATGTCAGTTCTTCGACAGTTACTTCGGAGAATAATAACTCCTCAACGATAGATCTGAAGAGCAATGGTTCTGCGACGATACGTTCTGCGGAGATTAATATAACCGAAACAACGGCTCCAGAAAATATAATAACTGAAACAAAGGTTCCAGAGAAGAGTATACCCGAAGTAAAATCTCCAGCGAAGAACATACCCGAACCAAAGTCTCCAGCGAAGAACATACCCGAAACAAAGTCTCCCGAGAAGAACACGCCCGAAACAAAGTCTCCAAAGGATTACTCCAAAGTCCCGGTTAGCAACAGGAGTTCTTCATCTTTCGTGAAGATGCGCGTGGAGCTCAACGAAGTCGAAACTCTACTGAGCGATGCAATATCGGCTGTATCGGATGAAAAGGACCAGAATGGAAAATCTCTCGATTGCTCGCAGCATCCCGAAGAGGTTGAGAAGACCGATGAAAATAGTTTCATCGAAAGTAACTCAGTGAACGCAGTCGTGCCTGTTACAGGAGAATTAAATCGCGACGACGCTGCCGCAGATGGCGACACGATACAGATTGATCGAGAAGCGGAATTGAACGCCTTACATTCGTGCAAAGATTGTTATGTACCATTGGTGCGACTGAACGtcaatagaaaaaagaaacgacgacgaggccCAGCGAAGAATACCGAGTCTCGTTCTCCCGGAAGTTTGTTTACTCGTAAACCCGTAGATATCGCACCTCTGATCGATCTCTCGATGGCAAAACCGAAGTATCTCAAAATCGTCAGTTGGCCATCGACACTATTTCCGTGTGAGCATTGCACCGAATCTTTCAACACTCATGCGAGCAGGGTGATGCACATCGAATTGCGCCACACCGTTGTTCCATCGATAGTTTGCGACAAAACTTTTTCAACCCGACAGGCTATGCTGCGTCATTATCGTGAGCGTCACTTCGTCTACACCGAAAACAAGACTTTTTGCGTTTGCGGTATGGAACTCGTTGGGCAGACAGCGATTCACCGTCATTTTTATCAATACGCTATCAAAGTCTTCGTGGTAAAAAGTTTACCTGAGGCTTCGCACAACGCGTGCAATCCGTTGCCAACGAACTACGATTGCGACAAGTGCGGCGCAACGTTCTGGTTGAAAACATGCTTGCAGTATCATCGGACTCTCGATTGCGAACGTTCGAAGGCCGTCCCATCGAAAGACATTTCTGCAACGACGTGTGTTCGTAAACGTTACAAACGACGTCACAAAGTGGTCCAATCGCATATGTGCACCGTGTGCGACACAGTGTTCTCGAGCGCCCAACAACAAGCCAGGCACGAAGCAAAGTACTCGCGTCGCGACAAACACCAGTGCAAGCTTTGCGGAACTGTTTTCAACGGAACCCGACTTTTGAGCGGTCACATTCAGACGACCCACAAACGCGATCCTGCGAAGCGTTATCCATATTACTGCCGGATTTGCGATCAAGGCTTCACCGTAGTATCGGCGGAACGTATTCACCGAATGCATTTCCATCGCGAAGGCGTTTCATTCGTCGACGAATTGACCAGCGACTCGGATCTCAACGAACTCCCAATGACCGACTCGGACATGTCCGACGACGAAACTACCAGGGAATGCAATGTTTGCGGTCACGAATTCACTAGCGGTCAGCGGTTCGTCAATCATCTAGTTTATTACACTAGGAGCGAGATTATCGAGTGCGGTATATGTCTTGAAGAGTTCGCCGGCCAGTACCAGGCCCATCGTCACAACAAGCTCGTTCATTATACCAGCGAATCGCGAGATGCTTTCACGCACTACTGTACAATTTGTCGGGAGGGCTTCATGTGGAGTACGCATCTGCACGCCCATCTGTGTCACGTTCACGGAATACCCGCTATCGACGCTCAATGCATGATAAACCTGTCCGACTCGAGGAGAAACAACAGCCAGAAAGTCGGTCTTCTCAATGTCGCCGATACCTGCAAGATCTGCGACATCACTTTTCCATCTCCGGTACTTCTGGCTACTCATGAAATCGAGAATCTGAATGACGGCGAATTCGTCTGCAACAAGTGTTCGAGGAGGTGTCGTACGGCATCGATACTCCTCGATCATCTGTCTCTCAATCACTCAAGTACGATTATTCAGGACGGAGTCAAGTGTCGCCGATGCAACGAGATATTCCAGACACGATCGGCTTGGGTGTCGCACGTCAAGCACTTTCACTTCAGCAAAGAGCCGTCCGAATTCTACTTCGAGAAGAACATAGCATCTTCGGAAAAGTCTATGCGCGGCTTGAGATACGAGCTCAATGTTCCAACCAACAGTTCGATAAGCAGCGGACTGACGAGTTTCAGAATAAGAAGCTATTTCGGCGAGTCTTCGCACACGCCAGAGACCATCGTCCCCGACAAACATATCCTCGAAAACGCTGACGCTCGAAACTTCATAAAAATCGAGGGAACTCCAAACAACGAGTGTCACAACAACGGACAAATTGTCGGATCTGACCCGGAGACAGCTTTGAAGTGCGCGATCTGCTTAGTGAGGTTACGCGAACCGGCCGAACTCGCGAGGCACATGGCACTGTTCTCGGACGAGGGCCACTACATGTGCGAACTTTGCGGCAGAAGATTCGCCTGGTTGAGCATCTACGAGGAACACAAGAAGAAACATTATCGCAACGatatcgacaaatttttctgTCCAACGTGCGACGAGGGATTCGAGACTTTGCAGTCTAAGACATCGCACGAGGCTCATCTGCACAAAAGATCACCCAAGTCCCATCGAAATGAGGACCAAAGCACCGATAACTCGCAACAATTGAAGTCTCCGAACAGATCATTTCCTCATCCAAAACTTCCTTCGATCGTTTCGTTCTTTCAATCTGGTTCGGCAAACGAGCAACGCTCGAATCGGTACGTGCTGGGTCTTCCTGATCAGAGAAAGCGCGAAGAACAACGCCACGAGACAAGCTCTTGGCCTAGGCTTCATACGGAAATCTTCGAGGACGAATTGTCGATGAGTTACCAATGTCCCGATTGTCAAGAAAAATATCCTACGCTCGATGGAATGCACGAGCATCTCACGATCGCTCACAACATGAAACAAGATCCATCTGAGGATGCACTTGTGGAGTCGCCTGCAGGTTTGCCTGAGGATTCACCTGAGGATTCGTCTGTAGATTTACCTGACTATTCGCCTGTTGATTTCCTTGAGGATTCTCCTGTGGATTTGCCTGTAGATTCGCCCGAGGTTTCCAGCATTTCCATTGATTTCGTGAAGTGCGAAATTTGCGATATGCTCTTTGTGAGCGAGAATCTCTTGAGCGTACACAAAAAGACGACTCATCCATCGTGTCCTGTTGTAGTCCGGAAAATCGGCAACACTCTCACTACCGTTGGGAATGATCCATCGGGCAAGCGTCTCCATTCCACTTACGATCATACTTACAACTCTAAAAAAACTAGCAAACTGCTACCAAACGGGCAAGTTCGTAAAAGGCGCTACCAAATAAGAAATTGTCCGGATCAGTCGACGAAATCTTCGAAGCCTTGGGAACAAGCTCTTTCCAATAACCCACAGTCAGTCGTCGAAGCTACCTCGACGTCAGGCTTGCGCGATAGCATCAATGGTACTTCAGAGAACTTCCAAGCGGAAGTCGTTCGTTGCGAAATCTGCGACATCGTGTTAATGAACAAGAAGGTTCTCCGAGCTCACGAGGTGAACAATCATGGACTGATCGTCAATGACAATCAGCCGAGCGATGATTCGTCGAACGGAGAGAGCGGTGGTTCTTCGTCAGCTGCCATACACCAGCTGAGTCTCTTCGTCGGGAAGTTACCGATCGCGCCGAAGGACGTTGACGAAAACGCGATCAGCATGGACTTTGAGAGCGTGATGATACCTGTAACGACTTACGACTTCGATATCATGCCAACGAAAACCGACAAGAGCGTCGAAAAACCGAAACCTATCGAAGACTCCTTCTCGAATTCCAACGTCGATAGTTTGCCATCTGGGAACTACAAAGTCTCCCAACTGAAGGTTCGACCGTTCGCTCGATCAAAACGTCCAAAAACTTCCAATGGACGAACACGTGGAAAGCACGGAACCTGCGGCTAA
- Protein Sequence
- MVRRSEARAAENIKDCTKVPENNENVSSSTVTSENNNSSTIDLKSNGSATIRSAEINITETTAPENIITETKVPEKSIPEVKSPAKNIPEPKSPAKNIPETKSPEKNTPETKSPKDYSKVPVSNRSSSSFVKMRVELNEVETLLSDAISAVSDEKDQNGKSLDCSQHPEEVEKTDENSFIESNSVNAVVPVTGELNRDDAAADGDTIQIDREAELNALHSCKDCYVPLVRLNVNRKKKRRRGPAKNTESRSPGSLFTRKPVDIAPLIDLSMAKPKYLKIVSWPSTLFPCEHCTESFNTHASRVMHIELRHTVVPSIVCDKTFSTRQAMLRHYRERHFVYTENKTFCVCGMELVGQTAIHRHFYQYAIKVFVVKSLPEASHNACNPLPTNYDCDKCGATFWLKTCLQYHRTLDCERSKAVPSKDISATTCVRKRYKRRHKVVQSHMCTVCDTVFSSAQQQARHEAKYSRRDKHQCKLCGTVFNGTRLLSGHIQTTHKRDPAKRYPYYCRICDQGFTVVSAERIHRMHFHREGVSFVDELTSDSDLNELPMTDSDMSDDETTRECNVCGHEFTSGQRFVNHLVYYTRSEIIECGICLEEFAGQYQAHRHNKLVHYTSESRDAFTHYCTICREGFMWSTHLHAHLCHVHGIPAIDAQCMINLSDSRRNNSQKVGLLNVADTCKICDITFPSPVLLATHEIENLNDGEFVCNKCSRRCRTASILLDHLSLNHSSTIIQDGVKCRRCNEIFQTRSAWVSHVKHFHFSKEPSEFYFEKNIASSEKSMRGLRYELNVPTNSSISSGLTSFRIRSYFGESSHTPETIVPDKHILENADARNFIKIEGTPNNECHNNGQIVGSDPETALKCAICLVRLREPAELARHMALFSDEGHYMCELCGRRFAWLSIYEEHKKKHYRNDIDKFFCPTCDEGFETLQSKTSHEAHLHKRSPKSHRNEDQSTDNSQQLKSPNRSFPHPKLPSIVSFFQSGSANEQRSNRYVLGLPDQRKREEQRHETSSWPRLHTEIFEDELSMSYQCPDCQEKYPTLDGMHEHLTIAHNMKQDPSEDALVESPAGLPEDSPEDSSVDLPDYSPVDFLEDSPVDLPVDSPEVSSISIDFVKCEICDMLFVSENLLSVHKKTTHPSCPVVVRKIGNTLTTVGNDPSGKRLHSTYDHTYNSKKTSKLLPNGQVRKRRYQIRNCPDQSTKSSKPWEQALSNNPQSVVEATSTSGLRDSINGTSENFQAEVVRCEICDIVLMNKKVLRAHEVNNHGLIVNDNQPSDDSSNGESGGSSSAAIHQLSLFVGKLPIAPKDVDENAISMDFESVMIPVTTYDFDIMPTKTDKSVEKPKPIEDSFSNSNVDSLPSGNYKVSQLKVRPFARSKRPKTSNGRTRGKHGTCG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00721592; iTF_01364960;
- 90% Identity
- iTF_00721592;
- 80% Identity
- -