Scul021007.1
Basic Information
- Insect
- Stenichneumon culpator
- Gene Symbol
- -
- Assembly
- GCA_964017025.1
- Location
- OZ024780.1:8642847-8646241[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 3.8 3.6e+02 2.4 0.0 3 16 219 232 218 234 0.91 2 14 0.017 1.6 9.8 3.6 1 23 404 427 404 427 0.97 3 14 4.3e-05 0.0042 17.9 1.3 3 23 516 537 514 537 0.93 4 14 0.0016 0.15 13.0 0.3 1 23 550 573 550 573 0.96 5 14 2.7e-05 0.0026 18.5 3.1 1 23 594 617 594 617 0.93 6 14 0.16 16 6.7 1.0 1 20 623 642 623 647 0.91 7 14 0.057 5.5 8.1 4.3 1 23 660 682 660 682 0.93 8 14 1.3 1.2e+02 3.9 0.1 3 23 690 711 688 711 0.87 9 14 1e-05 0.001 19.9 1.6 1 23 725 747 725 747 0.99 10 14 4e-07 3.9e-05 24.3 1.6 1 23 753 775 753 775 0.98 11 14 0.0019 0.18 12.7 0.9 1 23 781 803 781 803 0.98 12 14 0.0041 0.39 11.7 4.1 1 23 809 831 809 831 0.99 13 14 4.7e-06 0.00045 20.9 0.7 1 23 837 859 837 859 0.99 14 14 4.3e-05 0.0041 17.9 2.0 3 23 867 888 865 888 0.95
Sequence Information
- Coding Sequence
- ATGCTGACGCTCATTCTGCAAACTTCGGAAGGACAGCAGATCGAGTTGAACGTCCAGCCGGAGGATACGTTCGccgatttaaaaatacaatactCCGACACCGACGGCTTGTCCGAGTCGCTGGAACGACTCATCACCAATGGAGCCACAGTGGAAGAAAATACGAGGATATTCGACTATGTAACTAGCAGCgcacACGAATGGTTCAGCGCGGGTGAGACGCAGGAATCGAGCGTGCAGATCTCGGAGCCTGCGGATCCTCGGACGAGGGTGAAAGAATGTTGCGCCCAAGGCTGCTCCAATTCTGAAGTTGTCACGCCTGGTAAACCATTTTTTCCTTTGCCTACAGATCACGAAAGGCTCTCCTCGTGTCTGACGGAAGCGGGCAGGCTGGATCTGTACAGCCAGGTTCTCGGCGTTGACGCCGATAGTTACCAGAAGTATTTTTTATGCGGCAATCACTTCGCCGAAATTTCTTTACCGACGGCGCGCTCTGCAGAGCCGACGTCCACGATATCGCTACTGAAGCCGAAAAATGCGAGGATTCAGCCCGACGAACCAAAAAACGAGCTCCTGGAAGTCGATCCCGAAACGCGAGACTCCGTTTTCGATCTACCGAGAACACCGGACGATTTCGAGCATCCCGGAATTCTTTGCCGTTTGTGCGGCGAAACTACCGCAAATCCTGTTCATTTGTACGCGGAGAAGGTAGAGAACTCGGAATACAGTCTCGCTGACAAGATCAACTTGTGCCTTCCCGTTACGgTGAGCGTGACGGATCCTCTGCCGAAGCAGATATGCCAAGACTGCCAAGTTAAACTGAACGCATGCCACGAACTCGCGGTATCCTCTCTACGAACGGAGGATAAGCTTACTCTTCTCTTGCGAGAGAACAAGCTCTGCGCAAACGGTATTTCCGACCATCAGTGCCCTCTCTGTCTCGAGGGGGCTATGCGGATGGTGAAAAGAAGCGGCATCTACCGCAAGGAGGATCTACAGAACGACctaattttttcgaacgaCCGGAGACACGCCAGAGGCTCAGCTGGGTCCGAGGAGGATTCAACGAATTTCGACTACGTTATCTCGGACAGCGGTTCGCTTCCGGTACCGGAAGGAGAATTCCCGTGCTCAACGTGCAACGAAAGGCTGATCGGGGTCTCGGCGATCCGCTCGCATCGATGTCCAACCGATACGAGACATTCTCCATACAGTTGCGTTATCTGcgataaaaaacatttcacgCATGCCCAAGAGCTCGAGCTTCACTATCGTCAGCACGGCATAAAGAAGGAGAAATTTTTCTGCGAGCAGGGCAGCTACTCGTGCGGGGAGCGCGACAAGGTGACCGAGCACGTTAAAGCCTGCAGACCCGAGTTCTGGCAATTTCACTGCGACGCTTGCGACAAGACGCTCCCGAACGGCGAATCGCCGAACGATCACGATTGTCACGGCGCCTCGTCGGATCCTCTCGAGGCCGAGGTGAAATTCTCACCGGAGCCGGAAGCGCCGAAGGCGAAGAAGAGGCAACCGGCGCGCTACGGTTGTCACTTCTGCGAGAAGCGATTCGCGCGAAAGGGAAGCTTGCAGAAGCACATATCGGGGGCGCACAACGACTCGATGGGTGATCCAGCGGCCTCGAGGTGCTACAAGTGCAGAAGCTGCAACGAGGCCTTCGTGCGGGAAGCGGACGTCAGGACGCACATAAACCTTCGTCACCTCGACGCGTCGCGCTCCGAGCACGACCACGCCGTCGACGAATTGACGGTCGCGAGTTTGTACACCTGCGAGTACTGCGAGCGGTGTTTCACCACGCCGAGCTCCCTCCACGATCACCGCGAGGCCGAGCACGATAAAATTTCTTGTTACTCCTGCCCGACGTGCCTCGAGATGTTCGACTCTCACAAGCGGCTCGCCGCCCACAAGAGTCTGCGATCTCATCACAAGCCTCTTGACTACCTCAACTTGAAGCAGCTTTACCTGTGCAGGTACTGCGACAAGACCTTTCTCCATCATTCTACTCTCTCGGCGCACGAGCTTCAGCATCGCGAGCTCGCGCCCTATCTTTGCAGACCGTGCGGCCTTAGCTTCGAGACTTACAGGGAGGTCGCCTCGCATCGGGACGTCGTTCATCCCTACCAATCGGAGCTTCACGAGAGCTCCAGCCGATCGTACAAGTGTCAGTACTGCGGCAAACTCTTCTCTCACGAGGTCGTTCTCGTCAAGCACATAAGAATGCACACCGGCGAACGACCTCACAAGTGTTCCGTATGCGGCAAGGGATTCTCGCAGAGCTCCGGTCTGTACACTCACATGAAGATCCACTCGGATCTGCGACCCTACAATTGTCCGAGCTGTCCGCGCACCTTCAAGATCAAGGGCGATCGCAACAATCACGTGAAGAAACACTCGGGCAATCGGCCGTACAAGTGCGAATTTTGCTCGAAGGCGTTCATGACTCAGCACGTTTACAGTCAGCATCGGAGAATTCACACGAACGAGAGACCGTACAAGTGCGAAATTTGCGGCGAGGCCTTTCGAAGATCTTACGTAAGGACGGTCCACATGAGAAGACACACAGGCGAAAAGCCACATCTGTGCGATCTGTGCCCGAAGACCTATCGCCAGCGCAGCGATCTCGTCAAGCATCGAAAAGTACAGCACGGGATAAGCGTTGCTGCGAACAACGAGATCGTCTTTCCTGATGAACGCGAGGACGATTCTTACGACTCATTTGCTAAAGCTAACAAAATCGTAGAAAGTACGGCTGGTAATTCGCTGCTGTTGAGCCTCTGA
- Protein Sequence
- MLTLILQTSEGQQIELNVQPEDTFADLKIQYSDTDGLSESLERLITNGATVEENTRIFDYVTSSAHEWFSAGETQESSVQISEPADPRTRVKECCAQGCSNSEVVTPGKPFFPLPTDHERLSSCLTEAGRLDLYSQVLGVDADSYQKYFLCGNHFAEISLPTARSAEPTSTISLLKPKNARIQPDEPKNELLEVDPETRDSVFDLPRTPDDFEHPGILCRLCGETTANPVHLYAEKVENSEYSLADKINLCLPVTVSVTDPLPKQICQDCQVKLNACHELAVSSLRTEDKLTLLLRENKLCANGISDHQCPLCLEGAMRMVKRSGIYRKEDLQNDLIFSNDRRHARGSAGSEEDSTNFDYVISDSGSLPVPEGEFPCSTCNERLIGVSAIRSHRCPTDTRHSPYSCVICDKKHFTHAQELELHYRQHGIKKEKFFCEQGSYSCGERDKVTEHVKACRPEFWQFHCDACDKTLPNGESPNDHDCHGASSDPLEAEVKFSPEPEAPKAKKRQPARYGCHFCEKRFARKGSLQKHISGAHNDSMGDPAASRCYKCRSCNEAFVREADVRTHINLRHLDASRSEHDHAVDELTVASLYTCEYCERCFTTPSSLHDHREAEHDKISCYSCPTCLEMFDSHKRLAAHKSLRSHHKPLDYLNLKQLYLCRYCDKTFLHHSTLSAHELQHRELAPYLCRPCGLSFETYREVASHRDVVHPYQSELHESSSRSYKCQYCGKLFSHEVVLVKHIRMHTGERPHKCSVCGKGFSQSSGLYTHMKIHSDLRPYNCPSCPRTFKIKGDRNNHVKKHSGNRPYKCEFCSKAFMTQHVYSQHRRIHTNERPYKCEICGEAFRRSYVRTVHMRRHTGEKPHLCDLCPKTYRQRSDLVKHRKVQHGISVAANNEIVFPDEREDDSYDSFAKANKIVESTAGNSLLLSL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00721477;
- 90% Identity
- iTF_00721477;
- 80% Identity
- -