Scul014986.1
Basic Information
- Insect
- Stenichneumon culpator
- Gene Symbol
- -
- Assembly
- GCA_964017025.1
- Location
- OZ024776.1:145219-146978[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.00019 0.018 15.9 4.0 1 21 97 117 97 120 0.96 2 9 6.6e-05 0.0064 17.3 0.5 1 23 126 149 126 149 0.95 3 9 0.00059 0.057 14.4 1.3 2 23 197 218 196 218 0.96 4 9 1.6e-05 0.0016 19.3 2.0 1 23 224 247 224 247 0.97 5 9 0.00087 0.084 13.8 1.0 2 23 253 275 252 275 0.92 6 9 0.0006 0.058 14.3 0.6 1 23 280 303 280 303 0.97 7 9 9.2e-08 8.9e-06 26.3 0.3 1 23 318 340 318 340 0.96 8 9 7.5e-06 0.00073 20.3 0.4 1 23 346 368 346 368 0.97 9 9 2.6e-06 0.00025 21.8 0.1 1 23 374 396 374 396 0.98
Sequence Information
- Coding Sequence
- ATGCGATTACTCGACGGGGTGATTCTCTGCCGCGATAGTCAACTTGCCGTTGGAAAACTTTCGGTCCGGCGTTCGCAGAGGCTGAAGGGTGCGGTGTCGGAGGACTCTACGATCTGCACGACGATAAAGGAAGAAATTACGGAGGACGAGAACATCGACGCACCGTGTGGTAATCCGTTCCTCGAGGTGCTAATCAAGAGAGAGGACGATATAGTCTCGATGGCCGACGACGGCGAGGAGCTCGTCCATCTGAACGACGAagtcgacgaggaggaggtcTACGGCGATTATTCGTGCCAGAAGTGCAACATATGCTTCGCCACTTGGAACATGCTCAAGATTCACATGAAGTGCGTACACGAAGCTATACAGTGCTTCAAATGCAAGATATGCACGAAGGTGTACAACAACGCGGAGGCTTTCCAGTTGCACGTGACGTCCGATCACGGAAGAGACAACGACGCCGTGAACAATTGTCTCGAGACCCTGACCCTATATCGAGTCTCGCGAGGCACGTCGCTCTACACGcgcataaaaagaaaatacagcGCTCGAAGAACATCCTCCATTGCGGACAACCCGGAGATGTCGTGCAGTCAGTGTGACTACAAGACCAAGAACAAGACCTCGCTGGCGAAGCACGTGGCGAAACACGTTGAAGAGGCGAGATTCTCTTGCGAGAAGTGTGGAAGAAAATTCAAGATTCGTCGAAATTTGATTTACCACATAAGATACAGTCATCGCGAGCAGTCGTGCATATGCGACGCTTGCGGCAGGACGTTCGCCAACAACAGATCTCTCGACGCTCACAGAAAATTCGTCCACTTCGAGGGCAAGTTCCAGTGCAAGCTGTGCAATCGGTTGCTGATAAGCCAGGAAAACCTCGACACGCACATGCTCCGGCAGCACGTTCAGAGGAAACCGGCGAAGGCGAAACCGCTGCCGGAAAATTTCGTGTGCGAGACGTGCGGCAAAGTCTTCTCCAGAGCCGACCAGCTCAAGAGGCACAACCTCGTACACACCGGCGAGAAACCGTTCGTGTGCGCTATATGCAAGGAGACTTTCGCAAGAAAGAATTCTCTCACTCAGCACTTGCTTCTTCACACCGGTGCTAAACCCTACGTCTGCGACATATGCGGCAAAGCCTTCGCTCAAAAACCCGGACTCTCCGGGCACAGAAGATCACATCCCGGTCATCATCCACCTCTACCACCCGTCTTCATCGGCCCCATTATCGAGGACATTCTCAAACGATGCGACCTATAG
- Protein Sequence
- MRLLDGVILCRDSQLAVGKLSVRRSQRLKGAVSEDSTICTTIKEEITEDENIDAPCGNPFLEVLIKREDDIVSMADDGEELVHLNDEVDEEEVYGDYSCQKCNICFATWNMLKIHMKCVHEAIQCFKCKICTKVYNNAEAFQLHVTSDHGRDNDAVNNCLETLTLYRVSRGTSLYTRIKRKYSARRTSSIADNPEMSCSQCDYKTKNKTSLAKHVAKHVEEARFSCEKCGRKFKIRRNLIYHIRYSHREQSCICDACGRTFANNRSLDAHRKFVHFEGKFQCKLCNRLLISQENLDTHMLRQHVQRKPAKAKPLPENFVCETCGKVFSRADQLKRHNLVHTGEKPFVCAICKETFARKNSLTQHLLLHTGAKPYVCDICGKAFAQKPGLSGHRRSHPGHHPPLPPVFIGPIIEDILKRCDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00058160;
- 90% Identity
- iTF_00058160;
- 80% Identity
- -