Afus019346.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Amblyjoppa fuscipennis
Gene Symbol
Zfp42
Assembly
GCA_963575735.1
Location
OY754496.1:3230695-3232435[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 9 0.00019 0.017 15.9 4.0 1 21 97 117 97 120 0.96
2 9 0.00036 0.033 15.0 0.5 1 23 126 149 126 149 0.95
3 9 0.0007 0.064 14.1 1.0 2 23 197 218 196 218 0.96
4 9 3.2e-05 0.0029 18.3 2.2 1 23 224 247 224 247 0.96
5 9 0.0025 0.23 12.4 3.7 2 23 253 275 252 275 0.93
6 9 0.0006 0.055 14.3 0.6 1 23 280 303 280 303 0.97
7 9 1.4e-06 0.00013 22.6 0.5 1 23 318 340 318 340 0.96
8 9 7.6e-06 0.00069 20.3 0.4 1 23 346 368 346 368 0.97
9 9 2.6e-06 0.00024 21.8 0.1 1 23 374 396 374 396 0.98

Sequence Information

Coding Sequence
ATGCGATTGCTCGACGAGGTGATTCTCTGCCGCGATAGTCAACTCGCCGTTGGAAAGCTTTTGGTCCGGAGTTCGCAGAGGCTGAAGAGTGCGGTGTCGGAGGACTCTACGATCTGCACGACGATAAAGGAAGAATTTACGGAGGACGAGAACGTCGACGCCCCGAGTGGTAATCCGTTCCTCGAGGTGCTAATCAAGAGAGAGGACGATATAGTCTCGATGGTCGACGAGGGCGAGGAGCTCGTCCATCTGAACGACGAAGTTGACGAGGAGGAGGTCTACGGCGATTATTCCTGTCAGAAGTGCAACATATGCTTCGCCACATGGAACATGCTCAAGATTCACATGAAGTGCGTACACGAAGCTATACAGTGCTTCAAGTGCAAGATATGCTCGAAGGTGTACAACAACGTGGAGGCTTTCCAGTTGCACGTGACGTCCGATCACGGAAAAAACAACGACGCCGTGAACAATTGTCTCGAGACCCTGACCCTCTATCGGGTCTCGCGCGGCACGTCGCTCTACACGcgcataaaaagaaaatacagcGCTCGAAGAACATCCTCCGTGGCGGACAATCCGGAGATGTCGTGCAGTCTGTGCGACTACAAGACCAAGAACAAGACCTCGCTGGCGAAGCACGTCGCCAAACACGTCGAGGAGTCGAGATTCTCGTGCGAAAAATGCGGAAGAAAATTCAAGATtcgtcgaaatttgatttatcacATAAGATTCAGTCATCGCGAGCAGTCGTGCATATGCGACGTTTGCGGCAAGACGTGCGCCAACAACAGATCCCTCGACACTCACAGAAAATTCGTTCACTTCGAGGGCAAGTTTCAGTGCAAGCTGTGCAATCGGTTGCTGATAAGTCAGGAGAACCTCGACACGCACATGCTCCGCCAGCACGTGCAGAGGAAACCGGCGAAGGCGAAACCGCTACCGGAGAATTTCGTGTGCGAAACGTGCGGCAAAGTCTTCACCAGAGTCGACAAGCTCAAGAGGCACAACCTCGTCCACACCGGCGAGAAACCGTTCGTGTGCGCTATATGCAAGGAGACTTTCGCGAGGAAGAATTCTCTGACTCAGCACTTGCTTCTTCACACCGGTGCTAAACCGTACGTCTGCGACATATGCGGCAAAGCTTTCGCTCAGAAACCCGGACTCTCCGGTCACAGAAGATCGCATCCCGGTCATCATCCACCTCTACCGCCCGTATTCATCGGTCCCATTATCGAGGACATTCTCAAACAATGCGAACAATAG
Protein Sequence
MRLLDEVILCRDSQLAVGKLLVRSSQRLKSAVSEDSTICTTIKEEFTEDENVDAPSGNPFLEVLIKREDDIVSMVDEGEELVHLNDEVDEEEVYGDYSCQKCNICFATWNMLKIHMKCVHEAIQCFKCKICSKVYNNVEAFQLHVTSDHGKNNDAVNNCLETLTLYRVSRGTSLYTRIKRKYSARRTSSVADNPEMSCSLCDYKTKNKTSLAKHVAKHVEESRFSCEKCGRKFKIRRNLIYHIRFSHREQSCICDVCGKTCANNRSLDTHRKFVHFEGKFQCKLCNRLLISQENLDTHMLRQHVQRKPAKAKPLPENFVCETCGKVFTRVDKLKRHNLVHTGEKPFVCAICKETFARKNSLTQHLLLHTGAKPYVCDICGKAFAQKPGLSGHRRSHPGHHPPLPPVFIGPIIEDILKQCEQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01364865; iTF_00058920; iTF_00721458;
90% Identity
iTF_01364865; iTF_00058920;
80% Identity
iTF_00058920;