Scul019870.1
Basic Information
- Insect
- Stenichneumon culpator
- Gene Symbol
- -
- Assembly
- GCA_964017025.1
- Location
- OZ024779.1:11553872-11556648[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 4.5 4.3e+02 2.1 0.1 2 14 122 134 121 138 0.78 2 14 0.0012 0.11 13.4 0.1 2 20 148 166 147 167 0.94 3 14 0.00077 0.075 14.0 1.5 1 23 175 198 175 198 0.93 4 14 3.6e-06 0.00035 21.3 0.9 1 23 204 226 204 226 0.98 5 14 1.6e-05 0.0016 19.3 1.5 1 23 374 396 374 396 0.97 6 14 0.018 1.7 9.7 0.4 2 21 406 425 405 426 0.93 7 14 0.0011 0.11 13.5 2.3 1 20 448 467 448 470 0.92 8 14 0.0012 0.11 13.4 0.7 1 23 475 498 475 498 0.95 9 14 1.6e-06 0.00016 22.4 0.3 1 23 504 526 504 526 0.98 10 14 0.0023 0.23 12.5 6.3 1 23 533 555 533 555 0.98 11 14 8.4e-05 0.0081 17.0 0.4 3 23 563 583 561 583 0.97 12 14 0.00046 0.044 14.7 0.2 1 23 589 612 589 612 0.96 13 14 0.096 9.3 7.4 0.1 1 23 626 648 626 648 0.96 14 14 0.12 12 7.1 0.0 2 23 870 891 869 891 0.96
Sequence Information
- Coding Sequence
- ATGGAGACGCAAGATAATGATCATGCCTATGTGACGTTTCCCATTGGCGGAGTCCACACAGCTATGCAGCAGAATGTAATATCCCATGAGAAGATACACGAGTCAGACGAATGCGTGCGGACAAAGGCAGCGGCAAGCGTATTGTCCGCCGATGTATCAATGGAACAGTCTGATGAAGAAGGAGAAAAGTCTGAGGTTTATCCGATTTACATAAAACAGGAGGAGCATCAGAGACGTCGACGGCGACAGCAACAGCAGCCACAGCATCAGCATCAGTATACATCGGGAGACGACGAATCAATGGCTGTGGAAGCCCTTAGACAGCTCGGCGGTATGTATCCGTGTTacgaggacaaaaaaatgagCTGTCCAAAGTgcgcaaaaatatttatgcaaACCGATCAGGCAAAGCACAATGAAACATGCGAGAGCATTAAATTATCGTGTATGACTTGCGGCGAGAAATTCGAGAGAAAGCAGGATTTAAACAATCATATTGTTTGCCATCAAGTAGATAGACCGCACGCTTGTCGTACTTGCGGCAATCTGTTTCGTTCCAAAGCAAATCTGCAAACACACATGTCGCAGGTACATCAGACAGAAAAACCTCACAAATGTACGATATGCGGTGCTGATTTTCAGCGTCCATCGAGCTTATCGAATCACATGAAGATTCATACGTATGTTGCTGGCAGAGCGATAATGCAGTCGCAAATAAATTCCAACTCTCAATCGGCCGAAACTTTTGGAAAGTGGCAGGAGAGCGAGCAGCAAAATAATTCCATAATGTCGTCGCCTGTTGAATCTATCTCAAGTTATGACGTATCGCAGGTTCAATGGTCGGTTCCTTCTTACAGCTTTTCAAACGATCAAACAACCACCATAGCTATCGGTCAAGAAAAAATTGGTTCCATGCAAGAGTTCACAGTCATGCCGAATGGCGAGGTAACTCAGTTTGAATACGCGCAACAGAGTTTGATGACAAATCAGTACAGTTTATCAATTAATTCCTTTGGCAATTCGACGGATTCTGTGATCAAAGTTGAATCTATTCCGTTCACCTCGGAATCTCAAAGAAATGACGTCGAGATAGAGATTAACGAATCGCCCACAAAGTTTCACACATGCAATCATTGTGGAGTTAGCTTCTCTCGAGCTACTGCGCTCGCTTCCCATGAGAAGATTCACGGAGCTAAAAATTGGACAATGCCGATCGAATGCGAGTTCTGCGACAAACAGTTTCAGGATGGCAATCATTTAGCCACCCATCAGACTACCTGTGCAAAGAAACTTATGCAGAATAATATCGAGCAAGGAGTTCCGAGCGGCAAATGGGGAAAGCATGCGTGTATGGAGTGCGGCAAGAAGTTTACTACTAAACAAAAGATGTTCAGGCATCAGTGGATCCACCGTAAAAAAACGCATTCCTGTGAAATTTGCGGGACACaattcgagaaacaaaatcaACTGGACGAGCATCGTTTGTCAGCTCATCCGGGAGACTCGCCGTTCACCTGTAGCGAGTGCGGAAAGAGTTTCGTTTCTCGCCAAGGTCTCTGGGAGCACGGAAGAACTCACGCCGGAAGTCCAGCGCATTTTCACTGCGACACGTGTTCGAAGACATTCTCATCGCGTCAGGGCTATCTCATTCATCATCGTACGCACACCGGTGAAAGACCGTACGGCTGTAAATATTGTTGGAAAGCGTTTCGAGATGGTGGAACGTTGCGAAAGCACGAGCGCATTCACACGGGTGAAAGACCTCACGTTTGTCCTCTGTGCTCCCGAGCGTTCAATCAAAAAGTCGTGTTGCGCGAGCACGTTCGATGGGTTCACGCGGCTGGTAAGAACGACACGGACTTTACGGGACCTCCGTATCCGTGTCCGCTGTGCGGTGCGTTCAATCAAGATCGTGACGAGCTATGCGCTCACATAGTCAAGCACTCGGATCAGATGATAGCCGAGGCGAAAGCCAAGACCAACAATAACGCGCCAAAACCAAAACCGagtaagaaaaaatcaaaaactaGCGGTAATTCGATAGGGAAAAATATCGGTGGTGGAATGGTATCGCGGAACGAGCAAAACGAGGCTCTCCTATCGATAGCCGAGACCGTGGAAGAAgcggataaaaataatgacgGTAATAAAACGGAAGTTAATCAAACTTTGCTCCTCGTGAGTGGAGATAAAGATATGGGCTCGGAAGTCGAGAGCGACAATATACAAGATATTACAGACGAGATAGTTACCGGCGAGCAGGAAGACactataataacaaaaatacgtAACAGTGACATAAATGTATTGCATTTTATACAAACATCGAAAAGGACTGAAACACTTCATCTAATTGCTGGCTGTAAGAGTAATAATACGCTGCATCTCATAACAAAGCAGAACGAATCTTTCCCAGTTTTGACGATACCGAATCCGGAGAGTCATCTTAATTTTTCGAGTCAAATGAGCGAGAGTAATCGCGGTGAGGGTAACGGAAGTAGCGAAAAAGAAGAATCCATTATAGACGAGGAAACGGCGAATGTCGATCAAGTAGCTCAATATTTTCACCAACAGCAGCATCAAGACAGCGACGAAGACGAGGAAATGGTTTGTGGTATATGTGGCGATGATTTTGACGATAAAAACGTACTCATGGAACACGTTAAAATTCACATATAA
- Protein Sequence
- METQDNDHAYVTFPIGGVHTAMQQNVISHEKIHESDECVRTKAAASVLSADVSMEQSDEEGEKSEVYPIYIKQEEHQRRRRRQQQQPQHQHQYTSGDDESMAVEALRQLGGMYPCYEDKKMSCPKCAKIFMQTDQAKHNETCESIKLSCMTCGEKFERKQDLNNHIVCHQVDRPHACRTCGNLFRSKANLQTHMSQVHQTEKPHKCTICGADFQRPSSLSNHMKIHTYVAGRAIMQSQINSNSQSAETFGKWQESEQQNNSIMSSPVESISSYDVSQVQWSVPSYSFSNDQTTTIAIGQEKIGSMQEFTVMPNGEVTQFEYAQQSLMTNQYSLSINSFGNSTDSVIKVESIPFTSESQRNDVEIEINESPTKFHTCNHCGVSFSRATALASHEKIHGAKNWTMPIECEFCDKQFQDGNHLATHQTTCAKKLMQNNIEQGVPSGKWGKHACMECGKKFTTKQKMFRHQWIHRKKTHSCEICGTQFEKQNQLDEHRLSAHPGDSPFTCSECGKSFVSRQGLWEHGRTHAGSPAHFHCDTCSKTFSSRQGYLIHHRTHTGERPYGCKYCWKAFRDGGTLRKHERIHTGERPHVCPLCSRAFNQKVVLREHVRWVHAAGKNDTDFTGPPYPCPLCGAFNQDRDELCAHIVKHSDQMIAEAKAKTNNNAPKPKPSKKKSKTSGNSIGKNIGGGMVSRNEQNEALLSIAETVEEADKNNDGNKTEVNQTLLLVSGDKDMGSEVESDNIQDITDEIVTGEQEDTIITKIRNSDINVLHFIQTSKRTETLHLIAGCKSNNTLHLITKQNESFPVLTIPNPESHLNFSSQMSESNRGEGNGSSEKEESIIDEETANVDQVAQYFHQQQHQDSDEDEEMVCGICGDDFDDKNVLMEHVKIHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00058895;
- 90% Identity
- iTF_00059630;
- 80% Identity
- -