Scul014975.1
Basic Information
- Insect
- Stenichneumon culpator
- Gene Symbol
- ZFPM1
- Assembly
- GCA_964017025.1
- Location
- OZ024776.1:120500-121909[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.11 10 7.3 0.2 2 23 110 131 109 131 0.90 2 12 9.3e-07 9e-05 23.2 4.9 2 23 138 159 138 159 0.98 3 12 1.1e-06 0.00011 22.9 4.3 1 23 187 209 187 209 0.98 4 12 0.00016 0.016 16.1 4.8 2 23 215 236 214 236 0.97 5 12 0.001 0.1 13.6 0.1 1 23 241 263 241 263 0.98 6 12 1.3e-06 0.00012 22.7 0.9 1 23 271 293 271 293 0.98 7 12 0.037 3.6 8.7 4.2 1 23 299 322 299 322 0.94 8 12 0.00013 0.013 16.4 0.3 3 23 335 355 333 355 0.96 9 12 3.8e-06 0.00037 21.2 2.0 1 23 361 383 361 383 0.96 10 12 2e-08 1.9e-06 28.4 0.2 1 23 389 411 389 411 0.98 11 12 1.5e-07 1.5e-05 25.6 0.9 1 23 417 439 417 439 0.98 12 12 0.00023 0.022 15.6 2.0 1 21 445 465 445 466 0.96
Sequence Information
- Coding Sequence
- ATGTTCGCGAAGCTCGATTTGGTGAGGAAAGTCGGAGCTGATCCTATAGATGTGAAACCGTTGACGAAGCTCGCGCCGccgaaggaggaggaggaacaGCAGGATGAGGaggatgacgatgatgacgatgatgatgatgacgatgatgatgacgatgatgatgaaggtgatgatgatgatgatgttACGGAGTCGGCGAGCCCGGTTTGTCCGAAGATCGAGGAGGAGATGATAACGGACGATATAAAGAAAGAGATTGAGGAGAGCAACGTTGCCGGCAACGAGGAGAATGAGGAGGAGAACGACGACGACCTGCCGCTGGCTTGGCATTGCAAATTGTGCGGTATATTCTTCGCCTCCGAAGAGTTGATGGACAGTCACGAGCTCGAGCACAAGGGTAAGCGTAAGAATACGTGCAATCAGTGCGGCCGGGTGTTCCGCACTTGCGTTAATCTCCGTAAGCACATGAAGAAGCACGCCGgacgaaaacgaaaaacaacTGGAAATCCCGTAGGTCGACCGAGTTCGAAGGTAAAGAGGGAGAAGACCGATCCCGAATTCGTTTGCGCAACGTGCAACAAGGTTTTTCGTCACAAGAGCAACTATCAGAAGCACCTCATGCGTCACAGCGACGGTGACCTGACGTGCAAGCACTGCCCGAAGAAGTTTCGGCTGTTCCGTGACTTGACAAGGCACGAGAAGACCCACTTCTATCCGAGCTACATGTGCAAGGAGTGTGACTATGAGACGACGGTGCTGGCAGCACTCAGCATCCACATGACGAGGCACACCGATAAGGCTGATCTACCGTTCAAGTGCAACGAGTGCGACAAACGCTTCAGGAAGGCGATTGATCTTCAGGAGCACTACAACATTCATTCCGGCGACAAACCGTTTGTCTGCCACATGTGCGGCAGCGCATTTTATCTCAAACGCCAGCTATCCGCTCACTGTCGACGCTCCCATCCGGAAATAAAAGCCAACAAGGTGACGAGTACCGCCTGCGACATATGCGGTCGGGTTCTCGCCACGAAGAGATCCCTCTTTCGTCACAAGGAGAGTCACAATCCGACGAAACTGTACCTTTGCGATTTTTGCGGGAAGAGCCTCAGCAGCGCCGAGCATCTGAAGAAACACCGACGGATCCACACCGGCGAGAAGCCCTACGTATGCGACATATGCGGCAAGGGTTTCACCGATTCCGAAAATTTACGGATGCACCGGCGAGTTCACACCGGCGAAAAGCCTTACAAGTGTGATCAGTGCCCGAAAGCCTTCTCGCAACGCTCAACGTTGACGATCCATCGACGCGGGCACACTGGCGAACGACCCTACGTCTGCAAGATCTGCCATCGTGGATTTTCGTGCCAGGGAAATCTCACCGCTCATCAAAAATCTACTTGCGTTTga
- Protein Sequence
- MFAKLDLVRKVGADPIDVKPLTKLAPPKEEEEQQDEEDDDDDDDDDDDDDDDDDEGDDDDDVTESASPVCPKIEEEMITDDIKKEIEESNVAGNEENEEENDDDLPLAWHCKLCGIFFASEELMDSHELEHKGKRKNTCNQCGRVFRTCVNLRKHMKKHAGRKRKTTGNPVGRPSSKVKREKTDPEFVCATCNKVFRHKSNYQKHLMRHSDGDLTCKHCPKKFRLFRDLTRHEKTHFYPSYMCKECDYETTVLAALSIHMTRHTDKADLPFKCNECDKRFRKAIDLQEHYNIHSGDKPFVCHMCGSAFYLKRQLSAHCRRSHPEIKANKVTSTACDICGRVLATKRSLFRHKESHNPTKLYLCDFCGKSLSSAEHLKKHRRIHTGEKPYVCDICGKGFTDSENLRMHRRVHTGEKPYKCDQCPKAFSQRSTLTIHRRGHTGERPYVCKICHRGFSCQGNLTAHQKSTCV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00866161;
- 90% Identity
- iTF_00905577;
- 80% Identity
- -