Basic Information

Insect: Listrodromus nycthemerus
Gene Symbol: -
Assembly: GCA_963978505.1
Location: OZ021680.1:282134-283525[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.11 7.8 7.1 0.1 2 23 104 125 103 125 0.90

2 12 8.4e-07 6e-05 23.2 4.9 2 23 132 153 132 153 0.98

3 12 6.9e-07 4.9e-05 23.5 4.4 1 23 181 203 181 203 0.98

4 12 0.00015 0.01 16.1 4.8 2 23 209 230 208 230 0.97

5 12 0.00093 0.067 13.6 0.1 1 23 235 257 235 257 0.98

6 12 4e-06 0.00029 21.1 2.1 1 23 265 287 265 287 0.98

7 12 0.033 2.4 8.7 4.2 1 23 293 316 293 316 0.94

8 12 0.00012 0.0087 16.4 0.3 3 23 329 349 327 349 0.96

9 12 3.4e-06 0.00025 21.3 2.0 1 23 355 377 355 377 0.96

10 12 1.8e-08 1.3e-06 28.5 0.2 1 23 383 405 383 405 0.98

11 12 1.4e-07 9.9e-06 25.6 0.9 1 23 411 433 411 433 0.98

12 12 0.00021 0.015 15.7 2.0 1 21 439 459 439 460 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.11	7.8	7.1	0.1	2	23	104	125	103	125	0.90
2	12	8.4e-07	6e-05	23.2	4.9	2	23	132	153	132	153	0.98
3	12	6.9e-07	4.9e-05	23.5	4.4	1	23	181	203	181	203	0.98
4	12	0.00015	0.01	16.1	4.8	2	23	209	230	208	230	0.97
5	12	0.00093	0.067	13.6	0.1	1	23	235	257	235	257	0.98
6	12	4e-06	0.00029	21.1	2.1	1	23	265	287	265	287	0.98
7	12	0.033	2.4	8.7	4.2	1	23	293	316	293	316	0.94
8	12	0.00012	0.0087	16.4	0.3	3	23	329	349	327	349	0.96
9	12	3.4e-06	0.00025	21.3	2.0	1	23	355	377	355	377	0.96
10	12	1.8e-08	1.3e-06	28.5	0.2	1	23	383	405	383	405	0.98
11	12	1.4e-07	9.9e-06	25.6	0.9	1	23	411	433	411	433	0.98
12	12	0.00021	0.015	15.7	2.0	1	21	439	459	439	460	0.96

Sequence Information

Coding Sequence: ATGTTCGCGAAGCTCGATTTGGTGAGGAAAGTCGGAGCTGATCCTATAGATGTGAAACCGTCGACGAAGCTCGCATCGCcaaaggaggaggaggagcagcagcaggatGCGgaggatgatgatgatgatgatgatgattatgATGATGATGAGGATGACGACGATGTTGCGGAGTCGACGGTCCCGCTGTGTCCAAAAATCGAGGAGCAGATGATAAcagatgatataaaaaaagagatcgaGGAAAGCAACGTTGCCGACAACAAggtggacgaggaggagaacgacgacgacctGCCGCTGGCTTGGCATTGTAAATTGTGCGGTATATTCTTCGCTTCGGAGGAGTTGATGGATATTCACGAGCTCGAGCACAAGGGTAAGCGTAAGAATACGTGCAATCAGTGCGGACGGGTGTTTCGCACTTGCGTTAATCTCCGTAAGCACATGAAGAAGCACGCCggacgaaaacgaaaaacaactgGAAATCCCGTAGGTCGACCGAGTTCAAAGGTAAAGAGGGAGAAGACCGATCCCGAATTCGTTTGTGGGACGTGCAACAAGGTTTTCCGTCACAAGAGCAACTATCAAAAGCACTTGATGCGTCACAGCGACGGCGAACTGACGTGCAAGCACTGCCCGAAGAAGTTTCGGTTGTTCCGTGACTTGACGAGGCACGAGAAGACCCACTTCTATCCGAGCTACATGTGCAAGGAGTGCGATTACGAGACGACGGTACTGGCAGCGCTGAGCATTCACATGACGAGGCACACCGACAAGGCCGATCTACCGTTTAAGTGCAACGAGTGCGACAAACACTTCAGAAAGGCGATAGATCTTCAGGAGCACTACAACATTCATTCCGGCGACAAACCGTTTGTCTGCCACATGTGCGGGAGCGCGTTTTACCTTAAACGGCAACTATCCGCTCACTGTCGACGCTCCCATCCGGAAATAAAAGCTAACAAGGTAACGAGTACCGCCTGCGACATATGCGGTCGGGTTCTCGCCACGAAGAGATCGCTTTTCCGTCACAAGGAGAGTCATAATCCGACGAAATTGTACCTTTGCGATTTTTGCGGGAAGAGCCTCAGCAGCGCCGAGCATCTGAAGAAACATCGACGCATCCACACCGGCGAAAAACCCTATGTATGCGACATATGCGGCAAGGGTTTCACAGATTCCGAAAACTTGCGGATGCATCGGCGCGTTCACACCGGAGAAAAGCCTTACAAGTGTGATCAGTGCCCGAAAGCCTTCTCGCAACGTTCAACGCTGACGATCCATCGTCGCGGGCACACTGGCGAACGACCCTACGTCTGCAAGATCTGCCATCGTGGATTTTCGTGCCAGGGAAATCTCACCGCTCATCAAAAATCGACTTGCGTTTGA
Protein Sequence: MFAKLDLVRKVGADPIDVKPSTKLASPKEEEEQQQDAEDDDDDDDDYDDDEDDDDVAESTVPLCPKIEEQMITDDIKKEIEESNVADNKVDEEENDDDLPLAWHCKLCGIFFASEELMDIHELEHKGKRKNTCNQCGRVFRTCVNLRKHMKKHAGRKRKTTGNPVGRPSSKVKREKTDPEFVCGTCNKVFRHKSNYQKHLMRHSDGELTCKHCPKKFRLFRDLTRHEKTHFYPSYMCKECDYETTVLAALSIHMTRHTDKADLPFKCNECDKHFRKAIDLQEHYNIHSGDKPFVCHMCGSAFYLKRQLSAHCRRSHPEIKANKVTSTACDICGRVLATKRSLFRHKESHNPTKLYLCDFCGKSLSSAEHLKKHRRIHTGEKPYVCDICGKGFTDSENLRMHRRVHTGEKPYKCDQCPKAFSQRSTLTIHRRGHTGERPYVCKICHRGFSCQGNLTAHQKSTCV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00866161;
90% Identity: iTF_00721436; iTF_00058886; iTF_01364842; iTF_00058125; iTF_00059615;
80% Identity: -