Basic Information

Insect: Stegana nigrithorax
Gene Symbol: TRERF1
Assembly: GCA_037044495.1
Location: JBAMBQ010001592.1:591112-606487[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 0.00013 0.011 16.3 0.2 2 23 409 430 408 430 0.97

2 6 2e-06 0.00016 22.0 2.1 1 23 436 458 436 458 0.98

3 6 0.00013 0.01 16.3 2.6 1 23 464 488 464 489 0.95

4 6 0.00069 0.055 14.0 0.8 2 23 757 778 756 778 0.97

5 6 0.0019 0.15 12.6 0.3 1 23 1974 1998 1974 1998 0.98

6 6 9.2e-05 0.0074 16.8 0.8 1 23 2103 2125 2103 2125 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	0.00013	0.011	16.3	0.2	2	23	409	430	408	430	0.97
2	6	2e-06	0.00016	22.0	2.1	1	23	436	458	436	458	0.98
3	6	0.00013	0.01	16.3	2.6	1	23	464	488	464	489	0.95
4	6	0.00069	0.055	14.0	0.8	2	23	757	778	756	778	0.97
5	6	0.0019	0.15	12.6	0.3	1	23	1974	1998	1974	1998	0.98
6	6	9.2e-05	0.0074	16.8	0.8	1	23	2103	2125	2103	2125	0.98

Sequence Information

Coding Sequence: ATGGCAACCATAAACACGGTGCAGAAGAGTTTACATATACCTTTGTCGGGTCTAGCGACACCACGAACCGTACAGCTTATGTGCAGCGCCTCCGTGGGCAATTCCGAAAGTCCTTCAACATTGACATTACAACTGCGAGATGCGAATACAGCAACGGATGCCAATGATACAACgacaaattcaaatgcaacaTCCCCAGCcagtgcagcaacagcaactactgTGCCGACGACAGCGTCAACACTAGACAATGCCTTAACCATTGGGTATCCGGATCCGGAAATGTTGGCTGATGTTCTGGGCGTTATACAAACAGCATCACTTaagaataataacagcaacaacaatatcagcaacaataTATTAAGTAGCAGCAATACAGCAGTGTCaataagcacagcaacaacaacaacaagcgcagcaggagcaacaacTGGCATAACAGAATTAAACGTCACATCAGGCATTAACAGCaatccaaataaaattacCATAACACGTCGCaatacaacaaatgccaatagcagcagcagtaacaacaacaacaacaacaataacatcatcAACAAGGACAACAGTAAAACTATACAGCAGacaaataacaactacaacagcagcagcaacagcaactcaacacacacgcaaacgcacaacggcagcagcaacggcggcgTCAGCGGCAGCCACAGTGGCGGCAAATCGAACACTACCAGCTACATTAAGAATTGTCTTATACGGAGCAGCAGCTGTAGCAACACGGCAACCAATGTCACGACGCTCGCGCAAATAATGAGCAATAGCAGCACAAGCAGCGCGTCCGCCTTACTGCATAACAAtcacaatagcaatagcaatagcaacagcaacagcaacagcaacagcaattgcagcagcaacagcaattttaGCAATTCATCGAatacgagcagcagcaatgacagtACGCTCAGTTTAAGCAGCAGTCATAGTCTCAGTGCCAGTAGCTTAGTTAATTTTAACAGTGGTGTTGGCAATACcaaacacagcagcaataacaacaacaacaacaacaataataataacaacaaaaataataataataatgttaaaacAGTTGCACTTCAAACAAATCATGTTACAGCGAATAAGAGCAGCAACACATCCTCGTCAGtaggaacaacaacatcgcCAGGCTTAAAGAAACATCGACCGAAGCTATCGTCGCCAACGCGACACGGTCCACAGCAGTGTCAGATTTGCAGCAAGATCTTTGGAAATGCCTCAGCGCTGGCCAAACACAAATTGACGCACAGCGACGAACGGAAATACATTTGTACACTGTGCTCAAAGGCTTTCAAGCGACAAGATCACTTAAACGGACACATGATGACGCATCGCAACAAGAAGCCCTATGAGTGCAAGGCGGAGGGTTGCGGCAAATCGTATTGCGATGCGCGTTCGCTGCGACGTCACACGGAGAATCATCATGCCGGCATTGTGTCACCGCAGCATCACCAGCATCACAATCgtcacaataataataataataataacaacaacaacaacaacaacattagcactCAAACGCTGTCGCCAACAGCAAATGCGTCAGGTGCAGCCAGCGGCAACGGCATTAGTCTTAGTTTATCGCCAGCCACGGCCAGCGGCGATGCCAGTTCACCGGATGGTGCCACCTGCATAAGAACATACATTTCGAATGGCGGCACTGTGGTCGATGCTGCCACAGGCATTGCACTGACCGAGGAACAGATCAAGGCCATTAATCTGCCCATTAAGACCGGTGTTACGCTGCTCTCGCCCACAACGTCGACATCATCGACTGCCTCGTCGACTTCGTCGTGTTCAACGGGCGGCGGAGGTACGGTGGCTGTCTCAGCGGCTTCGCCCACAATCACGCTGGCCGATGGTGCCACTATTGAGGCGGAGGGTTTGACGCGCGAACAGCTGGATCTGATTAGTAAAATCATGCATCAGACAAAGCAGACCACCGCACAGGTGACCGTGTCATCGTCCACTAGTGTTAATTCGTATAAGATAAACACAGAATCaggcacacagcagcagagcagaccGCGTACTTGGAATATGCAATTGTTGAACAACTCACAGAATGTCTCGATTACTGTCGATGACAGCACCGGCGAGATGATTGCATCGTCGAGCTCACCTATTGAGGGCAAGGATGATGAGCTCAATCAACAGCTGCTCGCCACATTGAACCCACAGCTGTTGAACATTGTTAAGCTCGATCAGAGTGTTAAGCCAGTCGAGTGTAATCTCTGCCATCGCAAGTTCAAAAATATACCAGCCCTCAATGGGCATATGCGTTTGCACGGTGGCTATTTCAAAAAGGATCCCGAGACAAAGAAGAGCGATAAAAAGGAGTCCAATGGCCCACCACTGCAGACAGCCAGTATTGGCGTGCGTGCTCTGATCGAGGAGAAGATCATTAGCAAACGCAGCAAAGATCTAAATAAGGGTGCCTTCGTAGTTCCTGCACCACCCGGTAGCATAGCCAACACAACCACAATCCGCCGATCGATTAGCGATCTGGAGAGTTTCTTGAATCCCAAAGCGAATAGCGTAAGTGTAGCAACCAACGTAGCCACGAGCACAACCACCGCACTGCTGCCAGCGGCGACCACGATCAAGAACGCGAATGGTCTAAGCATACAGCAGATCGGCCTGCCGCAGAGCATTGAGATCTTTAGCAGCAAAACCCAGCAGCAGAAGACTCTTAACCTGGGCGCGGGTCCGAATACGTTGACTATAACCACAAATAATATAACGACAGCGCCCACAATGAGCGCGCTGGCAGCCCTCAATGCCAGCAGCCTCGGCCAGGCAGCCGCAAAGTGCTCAAAGGGCACTTCGACCGATCCCAAAGACTCAACGTTAATCGAATTGTTGAAGCGCGGCACACGCATTGCTGTGACCGCCAAAAAGACGCCACAGTCGCACACAAGTACAAACATGCttcagcaacaccaacaacagcagcaacaacaccaacaacaacaacagcagcagcagcagcagcaacttgtCAGCGATAGACAAAGCCCAAACCtgccaatggcaacaacagcaacgagcaGCCGCCAAAtcataacaaataataaccgCACTGTGATCATACCATCCGATGTACAAGTGGTGTCCACCAAAAGCAAATCCATTGGCAACAACTGCCTCACGCGCAGCGCCACACCAGCCAGCATCTCTTTAGCGGATGGCACGCCGCTCTCGCTGACCATAGCACCGAGCAGTGACAGCAACGGTGCCGACGTCTACACCGTCACGTACACGAGTGACTCCCCCGGCCTGTTCGATGATGCGGAGGTCTACAATGTCTCCGACACGGAGATGCTACTGCAAACCGTCGACACTATGGAGTTGCTCAATGCCAGTGAAGAAGCAACGCAAATCAAACGCGAACATTCCGATGAATACACCTTGGTCAGTGAACAGAGTGAAGGCAATCTAACGACGAATCTGATCAAAGTCGAACCCGATGTGAattgcagcaataataattgcaatataATCACAACGAAGACAACAGCGATTAcggccgcagcaacaacaacaacaaccgcttTACCAACTTTCCAACAGTTCCATTCCAAAGAGTTCATCATGCAGAACAGCTCACAAATCCAGGCGATCACGAGCATGCGCGCCAATACGCTAACGCTGCCCGCCGAACTTAAACACCAGCTGGGCGTATTGGGCTCGCCACTGCACTCACCACTGGCCTATCCGACACCGCCCTCCAGTCATGAGAATGCCGCACAGTCGTCGCCATTCATCGAGGACGGCCAACAGTACGTGGAGGCCACGAACGCTTTCTTCGGTGACAAATGCCCAAACGACTATACGAATGTCTACTTCAAGACGCACGACAACGATGATGACGTCGATGACGGAACGCTGACCGACAACGAGAAGATACTCAAGCTGAAGAGTGTGCTCGAGGAGAGCTCATTCGATGCTTCGATTAAAGTTGAAGATTTGCTAAACACCACCGAAGACGGCACGGAATGTGACTTGCGTGAGTTCGCCGAAACGAATCTTTCGTTTCTCGATGAGGATCAGGAGTTCTTAAACGATTCGGGCAATGCAACATCGCCATTATCGGAGTCCTTCTTCACAAGTGGCATAGGCACCGCTGAGGAGGTGAAGGAGGTGCTACGCGAAGTGCTGCCAGATGAGAATATGCAGTTGACCTCAGAGCAGCAGGGGGAGAACATCATAGATCTCTACTATCTGCCTGGTCTGGGTCTACAATCGCAAATGATGCCGAATTCGGAGGATCCGCTGCTGTCGTCCTCACCGCGTGAATTCGGCCAGCAGCGACAAGTGCAACTgcagcaaatggcaacacAGCAGACGGGCGAAAACCAGCTGCAGGGAACTGTCTACTCGCAGCAAATAATTCAACAGCAAGAAgtgccgcagccacagcagcagcagcaaccgcagcagcaacaaatccaCAATGATTTCATCATGCCaatggccagcagcagcagcagcagcaacgccgTCAACGGCGTCAATTCAAATGCCCTACAGCAGCTAAATAGCCTACAGAATCTGCTGCCCATACAGGGCCATACAGGGCAATATGTAGATGTCACGCATATGAGCGGACTCGGCCAGCAGAACACCGGCGACTCAATGGCCatgcaccagcagcagcagcagcaacagcagcagcagataaacACCATCGACACGGCTATGTTGCAGCCGATAATCTACACCGGTACCACCGGCAATGCCACTTCAGCCACCAacaccaccaccgccgccaccgaTAATAAGCAAGAACTGAATGTTGCGCTGCAGGCAGCAAACGCTGCCATCAACTTTCTACCCACTGAGTACAACAcaaccaccaccaccaacaacaacaacaacaacaacaataacggcagcagccacagcgccagcaaccagcagcaacagttgctgcCCAACGTTGGCATACAATTTGCCAACATTATGACAAAACCCACATTTCCATTGCAGCTGacgcctgctgctgcgcctgcaCCCACACCGACGCACACGCCCTTGGCTAACACCACATCCACCGTAATCTCCACCTTGCAGCCGCTGTCGAATCAAACGAATTCCATACTAAAGCGTCGCCTGCGACCGAACGGCTCAAACGATGCGAACGCACACAACTTCTCCAAGTTCCACACGCTGTCGCCATATCGTTCCAAGCTGCGCAAGCCCTCACGTACGCACTACACACCAGCTCCCATACTCAATCCCGATCGCAAGGGCATTGGCCTGTATTGCAAGGTACGCAAGGATCTTGGCCAAGGCATACTAAGCTTCGACAATTTCGATGATGACTTTGACGATCCGGTCGGTCTGGTTGACTTCTCGGATGAGTCAAAAGTAAATCTGGGTTCCGCCTATCAGGCGCAGATTCCTGCATATAAAATTAGCGAAGATAATGCGAGCATCGTAATCGATGAGCCCGTGGGTGCTGAACAAATGTGGGATCCGAATGTGCAGACCGACGAGAAGATACTCATGCGTTACATCGATCTCAGTAAATCATCGGCTGTGCCTTTGGGCAGTCATTCAGAGGAGGTGGCATTGCAGACACTGCTCAAGGCACATGGCAATTCGGCTGCAGCAGTGCTGACCCTGCTACAGATGCAGTCAAGCTCATTCCAAATGAAATGGTCCGCACACGAACTGGAAGTCTTTCTCAAGGGCCTCGAGAAGCATGGCAAGGACTTTGGCAAAATTGCCGCAGAATTGCAAACGAAAACGCCAGGCGAATGTGTGCAGATTTACTATTTTTGGAAGAAACTCTGCGTCGACTACAAGGTCTCACATCTAAAGGCGGAACCCGTGCCAGTGACTCCGACGCCAATCGAGCTAAAGCCCTATGTCTGCGAGATAACCGACTGCTCGGCGAGCTTCAGTTCGAAGGCTGCATTGCATGGGCACACGCGCATACATACCTATGGACGCAATACCAATAATCAGCATACAAGCAATAATTCAgccattaacaacaacaacatcaacaattcTAATAGCAATTCGAATACgctaacaacgacaacggcggCATATGCGTGCGCGCAATCGTTGAGTAATCAACAATACGGCAATCacaataacggcaacaacaacaacagtcataGCAGTCATGCGCAACACCaacacaacaatagcaacaacaacaacaataacatgtGCAATACAATTAACATCGCTGCCggccaacaaataaaagatgCCAACAATCAGCACGGCCGTGAACTCGAATTCCCGTGCAAGGTGTGCGGCAAAGTTTTCAATAAAGTCAAAAGTCGCAGCGCACATATGAAAACGCATCGCGTGCAGGATCCCGAACATCAGCAACCACAAATGCACAACCAGCACAACCAGAGTCAAAACTCAAAcccaagccaaagccaaagccaattacaacaaacacatataAACGCAGCCATGACAACGGCCGCAGCCACTCAGCAGCCGCAGACTGCATAA
Protein Sequence: MATINTVQKSLHIPLSGLATPRTVQLMCSASVGNSESPSTLTLQLRDANTATDANDTTTNSNATSPASAATATTVPTTASTLDNALTIGYPDPEMLADVLGVIQTASLKNNNSNNNISNNILSSSNTAVSISTATTTTSAAGATTGITELNVTSGINSNPNKITITRRNTTNANSSSSNNNNNNNNIINKDNSKTIQQTNNNYNSSSNSNSTHTQTHNGSSNGGVSGSHSGGKSNTTSYIKNCLIRSSSCSNTATNVTTLAQIMSNSSTSSASALLHNNHNSNSNSNSNSNSNSNCSSNSNFSNSSNTSSSNDSTLSLSSSHSLSASSLVNFNSGVGNTKHSSNNNNNNNNNNNNKNNNNNVKTVALQTNHVTANKSSNTSSSVGTTTSPGLKKHRPKLSSPTRHGPQQCQICSKIFGNASALAKHKLTHSDERKYICTLCSKAFKRQDHLNGHMMTHRNKKPYECKAEGCGKSYCDARSLRRHTENHHAGIVSPQHHQHHNRHNNNNNNNNNNNNNISTQTLSPTANASGAASGNGISLSLSPATASGDASSPDGATCIRTYISNGGTVVDAATGIALTEEQIKAINLPIKTGVTLLSPTTSTSSTASSTSSCSTGGGGTVAVSAASPTITLADGATIEAEGLTREQLDLISKIMHQTKQTTAQVTVSSSTSVNSYKINTESGTQQQSRPRTWNMQLLNNSQNVSITVDDSTGEMIASSSSPIEGKDDELNQQLLATLNPQLLNIVKLDQSVKPVECNLCHRKFKNIPALNGHMRLHGGYFKKDPETKKSDKKESNGPPLQTASIGVRALIEEKIISKRSKDLNKGAFVVPAPPGSIANTTTIRRSISDLESFLNPKANSVSVATNVATSTTTALLPAATTIKNANGLSIQQIGLPQSIEIFSSKTQQQKTLNLGAGPNTLTITTNNITTAPTMSALAALNASSLGQAAAKCSKGTSTDPKDSTLIELLKRGTRIAVTAKKTPQSHTSTNMLQQHQQQQQQHQQQQQQQQQQQLVSDRQSPNLPMATTATSSRQIITNNNRTVIIPSDVQVVSTKSKSIGNNCLTRSATPASISLADGTPLSLTIAPSSDSNGADVYTVTYTSDSPGLFDDAEVYNVSDTEMLLQTVDTMELLNASEEATQIKREHSDEYTLVSEQSEGNLTTNLIKVEPDVNCSNNNCNIITTKTTAITAAATTTTTALPTFQQFHSKEFIMQNSSQIQAITSMRANTLTLPAELKHQLGVLGSPLHSPLAYPTPPSSHENAAQSSPFIEDGQQYVEATNAFFGDKCPNDYTNVYFKTHDNDDDVDDGTLTDNEKILKLKSVLEESSFDASIKVEDLLNTTEDGTECDLREFAETNLSFLDEDQEFLNDSGNATSPLSESFFTSGIGTAEEVKEVLREVLPDENMQLTSEQQGENIIDLYYLPGLGLQSQMMPNSEDPLLSSSPREFGQQRQVQLQQMATQQTGENQLQGTVYSQQIIQQQEVPQPQQQQQPQQQQIHNDFIMPMASSSSSSNAVNGVNSNALQQLNSLQNLLPIQGHTGQYVDVTHMSGLGQQNTGDSMAMHQQQQQQQQQQINTIDTAMLQPIIYTGTTGNATSATNTTTAATDNKQELNVALQAANAAINFLPTEYNTTTTTNNNNNNNNNGSSHSASNQQQQLLPNVGIQFANIMTKPTFPLQLTPAAAPAPTPTHTPLANTTSTVISTLQPLSNQTNSILKRRLRPNGSNDANAHNFSKFHTLSPYRSKLRKPSRTHYTPAPILNPDRKGIGLYCKVRKDLGQGILSFDNFDDDFDDPVGLVDFSDESKVNLGSAYQAQIPAYKISEDNASIVIDEPVGAEQMWDPNVQTDEKILMRYIDLSKSSAVPLGSHSEEVALQTLLKAHGNSAAAVLTLLQMQSSSFQMKWSAHELEVFLKGLEKHGKDFGKIAAELQTKTPGECVQIYYFWKKLCVDYKVSHLKAEPVPVTPTPIELKPYVCEITDCSASFSSKAALHGHTRIHTYGRNTNNQHTSNNSAINNNNINNSNSNSNTLTTTTAAYACAQSLSNQQYGNHNNGNNNNSHSSHAQHQHNNSNNNNNNMCNTINIAAGQQIKDANNQHGRELEFPCKVCGKVFNKVKSRSAHMKTHRVQDPEHQQPQMHNQHNQSQNSNPSQSQSQLQQTHINAAMTTAAATQQPQTA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01363871;
90% Identity: iTF_01363871;
80% Identity: iTF_01363871;