Basic Information

Gene Symbol
TRERF1
Assembly
GCA_037044495.1
Location
JBAMBQ010001592.1:591112-606487[+]

Transcription Factor Domain

TF Family
MYB
Domain
Myb_DNA-binding domain
PFAM
PF00249
TF Group
Helix-turn-helix
Description
This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 3e-10 3.8e-07 30.2 0.1 2 45 1902 1945 1901 1946 0.93

Sequence Information

Coding Sequence
ATGGCAACCATAAACACGGTGCAGAAGAGTTTACATATACCTTTGTCGGGTCTAGCGACACCACGAACCGTACAGCTTATGTGCAGCGCCTCCGTGGGCAATTCCGAAAGTCCTTCAACATTGACATTACAACTGCGAGATGCGAATACAGCAACGGATGCCAATGATACAACgacaaattcaaatgcaacaTCCCCAGCcagtgcagcaacagcaactactgTGCCGACGACAGCGTCAACACTAGACAATGCCTTAACCATTGGGTATCCGGATCCGGAAATGTTGGCTGATGTTCTGGGCGTTATACAAACAGCATCACTTaagaataataacagcaacaacaatatcagcaacaataTATTAAGTAGCAGCAATACAGCAGTGTCaataagcacagcaacaacaacaacaagcgcagcaggagcaacaacTGGCATAACAGAATTAAACGTCACATCAGGCATTAACAGCaatccaaataaaattacCATAACACGTCGCaatacaacaaatgccaatagcagcagcagtaacaacaacaacaacaacaataacatcatcAACAAGGACAACAGTAAAACTATACAGCAGacaaataacaactacaacagcagcagcaacagcaactcaacacacacgcaaacgcacaacggcagcagcaacggcggcgTCAGCGGCAGCCACAGTGGCGGCAAATCGAACACTACCAGCTACATTAAGAATTGTCTTATACGGAGCAGCAGCTGTAGCAACACGGCAACCAATGTCACGACGCTCGCGCAAATAATGAGCAATAGCAGCACAAGCAGCGCGTCCGCCTTACTGCATAACAAtcacaatagcaatagcaatagcaacagcaacagcaacagcaacagcaattgcagcagcaacagcaattttaGCAATTCATCGAatacgagcagcagcaatgacagtACGCTCAGTTTAAGCAGCAGTCATAGTCTCAGTGCCAGTAGCTTAGTTAATTTTAACAGTGGTGTTGGCAATACcaaacacagcagcaataacaacaacaacaacaacaataataataacaacaaaaataataataataatgttaaaacAGTTGCACTTCAAACAAATCATGTTACAGCGAATAAGAGCAGCAACACATCCTCGTCAGtaggaacaacaacatcgcCAGGCTTAAAGAAACATCGACCGAAGCTATCGTCGCCAACGCGACACGGTCCACAGCAGTGTCAGATTTGCAGCAAGATCTTTGGAAATGCCTCAGCGCTGGCCAAACACAAATTGACGCACAGCGACGAACGGAAATACATTTGTACACTGTGCTCAAAGGCTTTCAAGCGACAAGATCACTTAAACGGACACATGATGACGCATCGCAACAAGAAGCCCTATGAGTGCAAGGCGGAGGGTTGCGGCAAATCGTATTGCGATGCGCGTTCGCTGCGACGTCACACGGAGAATCATCATGCCGGCATTGTGTCACCGCAGCATCACCAGCATCACAATCgtcacaataataataataataataacaacaacaacaacaacaacattagcactCAAACGCTGTCGCCAACAGCAAATGCGTCAGGTGCAGCCAGCGGCAACGGCATTAGTCTTAGTTTATCGCCAGCCACGGCCAGCGGCGATGCCAGTTCACCGGATGGTGCCACCTGCATAAGAACATACATTTCGAATGGCGGCACTGTGGTCGATGCTGCCACAGGCATTGCACTGACCGAGGAACAGATCAAGGCCATTAATCTGCCCATTAAGACCGGTGTTACGCTGCTCTCGCCCACAACGTCGACATCATCGACTGCCTCGTCGACTTCGTCGTGTTCAACGGGCGGCGGAGGTACGGTGGCTGTCTCAGCGGCTTCGCCCACAATCACGCTGGCCGATGGTGCCACTATTGAGGCGGAGGGTTTGACGCGCGAACAGCTGGATCTGATTAGTAAAATCATGCATCAGACAAAGCAGACCACCGCACAGGTGACCGTGTCATCGTCCACTAGTGTTAATTCGTATAAGATAAACACAGAATCaggcacacagcagcagagcagaccGCGTACTTGGAATATGCAATTGTTGAACAACTCACAGAATGTCTCGATTACTGTCGATGACAGCACCGGCGAGATGATTGCATCGTCGAGCTCACCTATTGAGGGCAAGGATGATGAGCTCAATCAACAGCTGCTCGCCACATTGAACCCACAGCTGTTGAACATTGTTAAGCTCGATCAGAGTGTTAAGCCAGTCGAGTGTAATCTCTGCCATCGCAAGTTCAAAAATATACCAGCCCTCAATGGGCATATGCGTTTGCACGGTGGCTATTTCAAAAAGGATCCCGAGACAAAGAAGAGCGATAAAAAGGAGTCCAATGGCCCACCACTGCAGACAGCCAGTATTGGCGTGCGTGCTCTGATCGAGGAGAAGATCATTAGCAAACGCAGCAAAGATCTAAATAAGGGTGCCTTCGTAGTTCCTGCACCACCCGGTAGCATAGCCAACACAACCACAATCCGCCGATCGATTAGCGATCTGGAGAGTTTCTTGAATCCCAAAGCGAATAGCGTAAGTGTAGCAACCAACGTAGCCACGAGCACAACCACCGCACTGCTGCCAGCGGCGACCACGATCAAGAACGCGAATGGTCTAAGCATACAGCAGATCGGCCTGCCGCAGAGCATTGAGATCTTTAGCAGCAAAACCCAGCAGCAGAAGACTCTTAACCTGGGCGCGGGTCCGAATACGTTGACTATAACCACAAATAATATAACGACAGCGCCCACAATGAGCGCGCTGGCAGCCCTCAATGCCAGCAGCCTCGGCCAGGCAGCCGCAAAGTGCTCAAAGGGCACTTCGACCGATCCCAAAGACTCAACGTTAATCGAATTGTTGAAGCGCGGCACACGCATTGCTGTGACCGCCAAAAAGACGCCACAGTCGCACACAAGTACAAACATGCttcagcaacaccaacaacagcagcaacaacaccaacaacaacaacagcagcagcagcagcagcaacttgtCAGCGATAGACAAAGCCCAAACCtgccaatggcaacaacagcaacgagcaGCCGCCAAAtcataacaaataataaccgCACTGTGATCATACCATCCGATGTACAAGTGGTGTCCACCAAAAGCAAATCCATTGGCAACAACTGCCTCACGCGCAGCGCCACACCAGCCAGCATCTCTTTAGCGGATGGCACGCCGCTCTCGCTGACCATAGCACCGAGCAGTGACAGCAACGGTGCCGACGTCTACACCGTCACGTACACGAGTGACTCCCCCGGCCTGTTCGATGATGCGGAGGTCTACAATGTCTCCGACACGGAGATGCTACTGCAAACCGTCGACACTATGGAGTTGCTCAATGCCAGTGAAGAAGCAACGCAAATCAAACGCGAACATTCCGATGAATACACCTTGGTCAGTGAACAGAGTGAAGGCAATCTAACGACGAATCTGATCAAAGTCGAACCCGATGTGAattgcagcaataataattgcaatataATCACAACGAAGACAACAGCGATTAcggccgcagcaacaacaacaacaaccgcttTACCAACTTTCCAACAGTTCCATTCCAAAGAGTTCATCATGCAGAACAGCTCACAAATCCAGGCGATCACGAGCATGCGCGCCAATACGCTAACGCTGCCCGCCGAACTTAAACACCAGCTGGGCGTATTGGGCTCGCCACTGCACTCACCACTGGCCTATCCGACACCGCCCTCCAGTCATGAGAATGCCGCACAGTCGTCGCCATTCATCGAGGACGGCCAACAGTACGTGGAGGCCACGAACGCTTTCTTCGGTGACAAATGCCCAAACGACTATACGAATGTCTACTTCAAGACGCACGACAACGATGATGACGTCGATGACGGAACGCTGACCGACAACGAGAAGATACTCAAGCTGAAGAGTGTGCTCGAGGAGAGCTCATTCGATGCTTCGATTAAAGTTGAAGATTTGCTAAACACCACCGAAGACGGCACGGAATGTGACTTGCGTGAGTTCGCCGAAACGAATCTTTCGTTTCTCGATGAGGATCAGGAGTTCTTAAACGATTCGGGCAATGCAACATCGCCATTATCGGAGTCCTTCTTCACAAGTGGCATAGGCACCGCTGAGGAGGTGAAGGAGGTGCTACGCGAAGTGCTGCCAGATGAGAATATGCAGTTGACCTCAGAGCAGCAGGGGGAGAACATCATAGATCTCTACTATCTGCCTGGTCTGGGTCTACAATCGCAAATGATGCCGAATTCGGAGGATCCGCTGCTGTCGTCCTCACCGCGTGAATTCGGCCAGCAGCGACAAGTGCAACTgcagcaaatggcaacacAGCAGACGGGCGAAAACCAGCTGCAGGGAACTGTCTACTCGCAGCAAATAATTCAACAGCAAGAAgtgccgcagccacagcagcagcagcaaccgcagcagcaacaaatccaCAATGATTTCATCATGCCaatggccagcagcagcagcagcagcaacgccgTCAACGGCGTCAATTCAAATGCCCTACAGCAGCTAAATAGCCTACAGAATCTGCTGCCCATACAGGGCCATACAGGGCAATATGTAGATGTCACGCATATGAGCGGACTCGGCCAGCAGAACACCGGCGACTCAATGGCCatgcaccagcagcagcagcagcaacagcagcagcagataaacACCATCGACACGGCTATGTTGCAGCCGATAATCTACACCGGTACCACCGGCAATGCCACTTCAGCCACCAacaccaccaccgccgccaccgaTAATAAGCAAGAACTGAATGTTGCGCTGCAGGCAGCAAACGCTGCCATCAACTTTCTACCCACTGAGTACAACAcaaccaccaccaccaacaacaacaacaacaacaacaataacggcagcagccacagcgccagcaaccagcagcaacagttgctgcCCAACGTTGGCATACAATTTGCCAACATTATGACAAAACCCACATTTCCATTGCAGCTGacgcctgctgctgcgcctgcaCCCACACCGACGCACACGCCCTTGGCTAACACCACATCCACCGTAATCTCCACCTTGCAGCCGCTGTCGAATCAAACGAATTCCATACTAAAGCGTCGCCTGCGACCGAACGGCTCAAACGATGCGAACGCACACAACTTCTCCAAGTTCCACACGCTGTCGCCATATCGTTCCAAGCTGCGCAAGCCCTCACGTACGCACTACACACCAGCTCCCATACTCAATCCCGATCGCAAGGGCATTGGCCTGTATTGCAAGGTACGCAAGGATCTTGGCCAAGGCATACTAAGCTTCGACAATTTCGATGATGACTTTGACGATCCGGTCGGTCTGGTTGACTTCTCGGATGAGTCAAAAGTAAATCTGGGTTCCGCCTATCAGGCGCAGATTCCTGCATATAAAATTAGCGAAGATAATGCGAGCATCGTAATCGATGAGCCCGTGGGTGCTGAACAAATGTGGGATCCGAATGTGCAGACCGACGAGAAGATACTCATGCGTTACATCGATCTCAGTAAATCATCGGCTGTGCCTTTGGGCAGTCATTCAGAGGAGGTGGCATTGCAGACACTGCTCAAGGCACATGGCAATTCGGCTGCAGCAGTGCTGACCCTGCTACAGATGCAGTCAAGCTCATTCCAAATGAAATGGTCCGCACACGAACTGGAAGTCTTTCTCAAGGGCCTCGAGAAGCATGGCAAGGACTTTGGCAAAATTGCCGCAGAATTGCAAACGAAAACGCCAGGCGAATGTGTGCAGATTTACTATTTTTGGAAGAAACTCTGCGTCGACTACAAGGTCTCACATCTAAAGGCGGAACCCGTGCCAGTGACTCCGACGCCAATCGAGCTAAAGCCCTATGTCTGCGAGATAACCGACTGCTCGGCGAGCTTCAGTTCGAAGGCTGCATTGCATGGGCACACGCGCATACATACCTATGGACGCAATACCAATAATCAGCATACAAGCAATAATTCAgccattaacaacaacaacatcaacaattcTAATAGCAATTCGAATACgctaacaacgacaacggcggCATATGCGTGCGCGCAATCGTTGAGTAATCAACAATACGGCAATCacaataacggcaacaacaacaacagtcataGCAGTCATGCGCAACACCaacacaacaatagcaacaacaacaacaataacatgtGCAATACAATTAACATCGCTGCCggccaacaaataaaagatgCCAACAATCAGCACGGCCGTGAACTCGAATTCCCGTGCAAGGTGTGCGGCAAAGTTTTCAATAAAGTCAAAAGTCGCAGCGCACATATGAAAACGCATCGCGTGCAGGATCCCGAACATCAGCAACCACAAATGCACAACCAGCACAACCAGAGTCAAAACTCAAAcccaagccaaagccaaagccaattacaacaaacacatataAACGCAGCCATGACAACGGCCGCAGCCACTCAGCAGCCGCAGACTGCATAA
Protein Sequence
MATINTVQKSLHIPLSGLATPRTVQLMCSASVGNSESPSTLTLQLRDANTATDANDTTTNSNATSPASAATATTVPTTASTLDNALTIGYPDPEMLADVLGVIQTASLKNNNSNNNISNNILSSSNTAVSISTATTTTSAAGATTGITELNVTSGINSNPNKITITRRNTTNANSSSSNNNNNNNNIINKDNSKTIQQTNNNYNSSSNSNSTHTQTHNGSSNGGVSGSHSGGKSNTTSYIKNCLIRSSSCSNTATNVTTLAQIMSNSSTSSASALLHNNHNSNSNSNSNSNSNSNCSSNSNFSNSSNTSSSNDSTLSLSSSHSLSASSLVNFNSGVGNTKHSSNNNNNNNNNNNNKNNNNNVKTVALQTNHVTANKSSNTSSSVGTTTSPGLKKHRPKLSSPTRHGPQQCQICSKIFGNASALAKHKLTHSDERKYICTLCSKAFKRQDHLNGHMMTHRNKKPYECKAEGCGKSYCDARSLRRHTENHHAGIVSPQHHQHHNRHNNNNNNNNNNNNNISTQTLSPTANASGAASGNGISLSLSPATASGDASSPDGATCIRTYISNGGTVVDAATGIALTEEQIKAINLPIKTGVTLLSPTTSTSSTASSTSSCSTGGGGTVAVSAASPTITLADGATIEAEGLTREQLDLISKIMHQTKQTTAQVTVSSSTSVNSYKINTESGTQQQSRPRTWNMQLLNNSQNVSITVDDSTGEMIASSSSPIEGKDDELNQQLLATLNPQLLNIVKLDQSVKPVECNLCHRKFKNIPALNGHMRLHGGYFKKDPETKKSDKKESNGPPLQTASIGVRALIEEKIISKRSKDLNKGAFVVPAPPGSIANTTTIRRSISDLESFLNPKANSVSVATNVATSTTTALLPAATTIKNANGLSIQQIGLPQSIEIFSSKTQQQKTLNLGAGPNTLTITTNNITTAPTMSALAALNASSLGQAAAKCSKGTSTDPKDSTLIELLKRGTRIAVTAKKTPQSHTSTNMLQQHQQQQQQHQQQQQQQQQQQLVSDRQSPNLPMATTATSSRQIITNNNRTVIIPSDVQVVSTKSKSIGNNCLTRSATPASISLADGTPLSLTIAPSSDSNGADVYTVTYTSDSPGLFDDAEVYNVSDTEMLLQTVDTMELLNASEEATQIKREHSDEYTLVSEQSEGNLTTNLIKVEPDVNCSNNNCNIITTKTTAITAAATTTTTALPTFQQFHSKEFIMQNSSQIQAITSMRANTLTLPAELKHQLGVLGSPLHSPLAYPTPPSSHENAAQSSPFIEDGQQYVEATNAFFGDKCPNDYTNVYFKTHDNDDDVDDGTLTDNEKILKLKSVLEESSFDASIKVEDLLNTTEDGTECDLREFAETNLSFLDEDQEFLNDSGNATSPLSESFFTSGIGTAEEVKEVLREVLPDENMQLTSEQQGENIIDLYYLPGLGLQSQMMPNSEDPLLSSSPREFGQQRQVQLQQMATQQTGENQLQGTVYSQQIIQQQEVPQPQQQQQPQQQQIHNDFIMPMASSSSSSNAVNGVNSNALQQLNSLQNLLPIQGHTGQYVDVTHMSGLGQQNTGDSMAMHQQQQQQQQQQINTIDTAMLQPIIYTGTTGNATSATNTTTAATDNKQELNVALQAANAAINFLPTEYNTTTTTNNNNNNNNNGSSHSASNQQQQLLPNVGIQFANIMTKPTFPLQLTPAAAPAPTPTHTPLANTTSTVISTLQPLSNQTNSILKRRLRPNGSNDANAHNFSKFHTLSPYRSKLRKPSRTHYTPAPILNPDRKGIGLYCKVRKDLGQGILSFDNFDDDFDDPVGLVDFSDESKVNLGSAYQAQIPAYKISEDNASIVIDEPVGAEQMWDPNVQTDEKILMRYIDLSKSSAVPLGSHSEEVALQTLLKAHGNSAAAVLTLLQMQSSSFQMKWSAHELEVFLKGLEKHGKDFGKIAAELQTKTPGECVQIYYFWKKLCVDYKVSHLKAEPVPVTPTPIELKPYVCEITDCSASFSSKAALHGHTRIHTYGRNTNNQHTSNNSAINNNNINNSNSNSNTLTTTTAAYACAQSLSNQQYGNHNNGNNNNSHSSHAQHQHNNSNNNNNNMCNTINIAAGQQIKDANNQHGRELEFPCKVCGKVFNKVKSRSAHMKTHRVQDPEHQQPQMHNQHNQSQNSNPSQSQSQLQQTHINAAMTTAAATQQPQTA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01364181;
90% Identity
iTF_01364181;
80% Identity
iTF_01364181;