Snig010876.2
Basic Information
- Insect
- Stegana nigrithorax
- Gene Symbol
- lrrfip2
- Assembly
- GCA_037044495.1
- Location
- JBAMBQ010004029.1:130813-134686[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 0.46 4.5e+03 -3.3 1.1 57 57 45 45 10 109 0.51 2 5 0.18 1.7e+03 -1.9 0.6 44 75 94 126 73 151 0.50 3 5 0.015 1.5e+02 1.6 4.2 36 90 210 269 185 276 0.71 4 5 1.9e-112 1.8e-108 362.5 24.4 1 299 423 722 423 723 0.90 5 5 0.21 2e+03 -2.1 4.1 216 245 748 776 726 796 0.50
Sequence Information
- Coding Sequence
- ATGCCTTCGaaacgcgaaaaaaataaaattttagctGCGGAgaaggcaaaaacaaagccgGCCACAAaggagaacaacaaaaacaccaaaataaacaaagcggcaaaagccaaagctgcagcaacagccacagcagcaacagcagcagcagcggcagcagcgacaacaccaataacgccaacaacaccaacaacaacagcagcagcagcagcagctgtaacAGACGTTGAAGTAGAAGTGGCTATTGATGCGGTCGCAGTCGCCGATGAGACAAATACAACGGAATTAGTAGAAGAAAAATCAAGAACAGCGGCGGAAgcgacggcgacaacaactgctggcaacaaaaaaacgttAAGATCTAACAGCGATGAAGTCATCGAAGAATTCGACTTCAGTGATAGCGATTTACTTGCGCTCAGCGACGATGAGGATGTGGGGGCGGAGGTAGAGGCAGAGGCAAAATCGAGCGCAGAAACGAAGCCGGTTGATCAAAATGCACTAAACACGATAGCAACGCAAAACTTGCaaagcaatggcaatgacaacgacaaaaacaaccataataataacaataacaacaacaacaacaacaaagttaacCTCAACGTCAACATCGACGACAACGAAGTCagcacaagcaaaaataacagtaACGGCACGAACACAAATGATAACAATGATAAAGCggcgacaacagcagcgacaacagcgacaacgctcgataaaaagcaaacaaaagctgaAAGTGAAGATGCGGAGCAGCAGGTGGTGCCGGCAGCAGCGACTACAAAAGCTATTAAGAACGATAAAGAATCAGCAGCGgcgacaccagcagcagcggcagcagcagcagcagcgaataCAAGTGACGAATTTGCCATGATGAAAGTATCCTCTGGCGGCGTGGCTGTCGCAGACGATGACAATAATGATAAAAGTGGCATTAATGCAGCAATTGAGACTAAACGCGTAAAAGCCGCGCCACCAGCTAATCTAGAGCTGAAAACAGATGCAGACGCTGCAGCGCCTGAGCAGCAGTTGCCATATTGTCCGATCACGCCAAGACGCATTGTGGACACCgccgacgatgatgatgattatgattcCGTTGCCAAGCCGGATAATAAGAGTCAACAAGCGCAAACGCTTAGAAAGCCTACGGCCGCGAACGACGCCAACGATGAGGATTACGACGATGACTATGCGGAGGATGAGCCCGAGGATGAATTGCTCGTGCAGTTTTTGGGCGAAGCAAATCGAATTGCCGAAGCTCGTTTGGCGGCGCGTCGACAGGCCCGTGCTGAGGCACGCGAAATACGCATGCGCGAATTGCAGCGGCAACAGAAGGAACAGGAACAGAATGCAGACCGTGTATTCGATATGCATAACGCCGGCGGCACTGGCAGTGACCCGCTGGCGCGCTCAACCCGCCTTGCGTCCGGTGTGCCCCCAGTTGTTGGCGGCGTGTTGAATGCGACACGCGTTGTTAGTGCCAGTTCGATGTCATCGCGTCGAAGTAGTGAGGACTCTTTGGAGGAGGAGGGCCGCAGTCTGCGAGACATACGGCATGAACTGAAGGACGTTGAGGAACGATTTCGCAAAGCGATGATCGCCAATGCCCAGCTCGATAATGACCGCGCCTCACAGACGTTCGAAGTGAAACTGCTTAAGGACAAAATCGAAACGATGCAGGAATCATATGCACAACTCGAACGCGAATTCAAAGAGAAGTCACGCGACTACAATGCTCTGAAACGCAATCTGGACAGATTGACGCTGGAGCTGAAGCTGGTGCAGGGCCAGCTAAACGAACGGGACACGCTAATTGCGGAACAGGGTTTAGTGATTGTTGCCGTCGAGAATGCCGATGGCACAGATGCCAAGCGTGCTCTAGTCAGTATGGAAAACGCAAATGTGCTTGCCTCCGTGCAAGGTTCCTTAGATGTGCGACTCAAAAAGTTCAACGAAGAGAAACAGCAACTCGTGAGCGAAGTTCAAAAGCTGCAAGAACAACTCGAGGCCTACAAGAGCGAAGGCAAAGGACGTGGCAATTCATTGAATGGGCCATTGGGGTCTGATGAGGATTACGAGGCTCAAAgAGAAGCGAATAAGATCATATCAGACTATAAATACAAACTGCAAAAAGCTGAACACGAAATCGCTAGTCTGCAGGCGAGCTTAGCACGTTCAGAGACGCAGGTCATACGCTATAAGAGCACAGCGGAAGCGGCCGAGAAGGCCGAAGCGGAGCTTAAGGTCGAACGCCGGAAACTGCAACGAGAGAATCGCGAAGCAATGGAACGCCTTGAGGAGCTGGAAACATCAAATAATCATCTGTTAAAACGATTGGACAAATTGAAGAATGCAAAGAGTGCTCTACTGAAAGATCTTTGA
- Protein Sequence
- MPSKREKNKILAAEKAKTKPATKENNKNTKINKAAKAKAAATATAATAAAAAAATTPITPTTPTTTAAAAAAVTDVEVEVAIDAVAVADETNTTELVEEKSRTAAEATATTTAGNKKTLRSNSDEVIEEFDFSDSDLLALSDDEDVGAEVEAEAKSSAETKPVDQNALNTIATQNLQSNGNDNDKNNHNNNNNNNNNNKVNLNVNIDDNEVSTSKNNSNGTNTNDNNDKAATTAATTATTLDKKQTKAESEDAEQQVVPAAATTKAIKNDKESAAATPAAAAAAAAANTSDEFAMMKVSSGGVAVADDDNNDKSGINAAIETKRVKAAPPANLELKTDADAAAPEQQLPYCPITPRRIVDTADDDDDYDSVAKPDNKSQQAQTLRKPTAANDANDEDYDDDYAEDEPEDELLVQFLGEANRIAEARLAARRQARAEAREIRMRELQRQQKEQEQNADRVFDMHNAGGTGSDPLARSTRLASGVPPVVGGVLNATRVVSASSMSSRRSSEDSLEEEGRSLRDIRHELKDVEERFRKAMIANAQLDNDRASQTFEVKLLKDKIETMQESYAQLEREFKEKSRDYNALKRNLDRLTLELKLVQGQLNERDTLIAEQGLVIVAVENADGTDAKRALVSMENANVLASVQGSLDVRLKKFNEEKQQLVSEVQKLQEQLEAYKSEGKGRGNSLNGPLGSDEDYEAQREANKIISDYKYKLQKAEHEIASLQASLARSETQVIRYKSTAEAAEKAEAELKVERRKLQRENREAMERLEELETSNNHLLKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -