Slit009495.1
Basic Information
- Insect
- Spodoptera litura
- Gene Symbol
- su(Hw)
- Assembly
- GCA_002706865.1
- Location
- NC:8347960-8352881[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 0.47 7.4e+03 -3.0 0.1 19 44 118 143 114 147 0.76 2 5 0.018 2.8e+02 1.6 0.3 30 53 157 175 151 176 0.72 3 5 0.00045 7.2 6.7 0.1 26 53 185 212 178 213 0.89 4 5 1.7e-05 0.28 11.2 0.2 21 46 304 329 300 332 0.93 5 5 7.8e-06 0.12 12.3 0.0 22 52 391 421 386 422 0.91
Sequence Information
- Coding Sequence
- ATGCCGCCTAAACGGAAGGTAGGGCGTCCGCCTGGATCCAAAAATAAGAAAGGCAGGAAAACGTGTAAAAAGATTGTGAAAAAGAAGCCTGTTTCGATAATACGTGTAGAAAAGGAAAAAGATGAACGTTCTTCAAATAGTAATGATTGTACTACAAGCGATGAAAATGTCTGTGGAGTGTGCCAAAATATGTTCAACTCTAAAGACGAGCTGGGTACCCATCATGAACGGTGTCGTGCTTTGGAAATTGTATCAGATTATTTCCCAAAGCAGGCAGCATACACTTGCAATGAATGCCCCAAGAAATTTAGATTCaagaaaagttttattgaacaTTGCAAGAATGAACACTCCAAGTCACCTAAAAGAGTAGCATGTAGTCAGTGCAATGTGTATTGTCCTGACACGAAGACATTGAAGGAACATATCGCAAAGGTTCATGAAAGAGATATTTATGAATGTCCTACATGCCAGCGGCAATTTGTCCGTCGATCACATGTACTTCGGCATATGGCACAGACAGGGTGTGATGGCCAAGGAGCAGCAGAATACTCATGTGAAATATGCCATGTAACATTCACTAGGAAAGATAATTTAATGGTGCATATAAGACTGCAACATATAGTGAGAAATGGTTACAAATGCAAGAGCTGCAAATTTGACTCGAAGAATTTTTCCAAATTGGTAGCCCACTGGCATGCAAATCATGcagAGACTCCTGGGCAATACCAATGCAACACTTGCAGCAAATGGACCAGCTCCCGAGCAGCCATGACCAAACACCTTGAAATACACGGTGAAAAGAAATATGCATGTGATGTGAAGTTAAGAGATGTGGGCGTGTGGTTGCAGTGCGGGTACAGCACGTACACCATCGAGGTGATGCGGCGCCACGTGCTGACGCATGTGTCGGAGAAGCCGTACAAGTGCGAGATCTGCTCCAAGTCCTACATCCAGCGCGCTCAGCTGCAGCGCCATCTCGAGATCCACACAGGCAACCTATGCACCAAGTGTGAAACTCCATTCCCCTCCAGAGCAAAGTTACTGGTTCACATGAGAGAACATATGGGATTAGATAAGTTGCATTGCCCCATAAAGACATGTACTTATTACACAAAAGCTTTTTCCACTGAAAGTGGGCTGAACCATCACTTGAAAACGCATGGGGATGATAAGCCGTACAGCTGCGAGGTATGCGATAAGAAGTTCCACTCGGATATGAACCTGCGCCGACACTTGGAGACGCACACGTTGGACAAGCCGCGGCGCTGCATGTACTGCGTGTCGGCGCGCGCCTACGTGCGCGGCGCACAGCTCCTCCGCCACGTGCGCAAGAACCACGACTCCATCTTCCGCGGCCATCTGCTGCATGTGCGCCAAGTGCTCGGTGCCGATAGCACAGCAGAAAGAGTGAAAAAGTCTGAATTAGATGCAATCCTAAACTTGTTAGATGTGGAATCGGATCGAATCTTGCAAGGCTACAGCGGAGCTGATGTGCTCTACGGTGGTATGCAAGATGACGAAAATCGTGCCAGCAAAGAAGTACCTAACAACGAGCCAAAGAAAGTAAACTCTCCCCTACTGTCAGAAGATGAGCTTACCGAGAATTTGAGAAAACTGCTTTCCAAACTTATAGATAAGGAAACACTCCATCTATTTGGGTGGCCCGATGAGAGTGTAGATGTGGTATTGGAAAAAGTAATCGAACAGTGTGGCGCTAAACCCGCAGACCGCGAAAAGTGGACACGTGTGCAACGGTTGCGCGAGAACTCCAAGCATTTGTTCTTGTACGTTATTGAAGACAAGAACATAGCGCGCATGCTGGGCACACACACCATTGATCAAATTGTTAAACATATACTGAAGCAAGTCAGCGACGATGATGCCAACGAGATCTAG
- Protein Sequence
- MPPKRKVGRPPGSKNKKGRKTCKKIVKKKPVSIIRVEKEKDERSSNSNDCTTSDENVCGVCQNMFNSKDELGTHHERCRALEIVSDYFPKQAAYTCNECPKKFRFKKSFIEHCKNEHSKSPKRVACSQCNVYCPDTKTLKEHIAKVHERDIYECPTCQRQFVRRSHVLRHMAQTGCDGQGAAEYSCEICHVTFTRKDNLMVHIRLQHIVRNGYKCKSCKFDSKNFSKLVAHWHANHAETPGQYQCNTCSKWTSSRAAMTKHLEIHGEKKYACDVKLRDVGVWLQCGYSTYTIEVMRRHVLTHVSEKPYKCEICSKSYIQRAQLQRHLEIHTGNLCTKCETPFPSRAKLLVHMREHMGLDKLHCPIKTCTYYTKAFSTESGLNHHLKTHGDDKPYSCEVCDKKFHSDMNLRRHLETHTLDKPRRCMYCVSARAYVRGAQLLRHVRKNHDSIFRGHLLHVRQVLGADSTAERVKKSELDAILNLLDVESDRILQGYSGADVLYGGMQDDENRASKEVPNNEPKKVNSPLLSEDELTENLRKLLSKLIDKETLHLFGWPDESVDVVLEKVIEQCGAKPADREKWTRVQRLRENSKHLFLYVIEDKNIARMLGTHTIDQIVKHILKQVSDDDANEI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01361936;
- 90% Identity
- iTF_01363362;
- 80% Identity
- iTF_01363362;