Slit006483.1
Basic Information
- Insect
- Spodoptera litura
- Gene Symbol
- Znf711
- Assembly
- GCA_002706865.1
- Location
- NC:8475129-8480466[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 4 2.3e+02 2.4 1.6 1 23 240 263 240 263 0.93 2 18 5.8e-06 0.00033 20.8 2.9 1 23 268 290 268 290 0.99 3 18 0.0026 0.15 12.5 0.8 1 23 320 343 320 343 0.96 4 18 0.025 1.4 9.3 0.5 2 23 404 426 403 426 0.92 5 18 0.00036 0.021 15.1 1.0 1 23 432 455 432 455 0.93 6 18 0.0039 0.22 11.9 0.3 3 21 460 478 458 479 0.94 7 18 0.0037 0.21 12.0 0.1 1 23 487 510 487 510 0.94 8 18 8.9 5e+02 1.3 0.3 1 23 515 538 515 538 0.87 9 18 0.032 1.8 9.0 0.2 2 23 551 572 550 572 0.96 10 18 0.0058 0.33 11.3 2.1 1 23 578 600 578 600 0.97 11 18 9.8 5.6e+02 1.2 0.1 2 9 606 613 605 616 0.88 12 18 6.1e-05 0.0035 17.6 2.2 1 23 636 658 636 658 0.97 13 18 0.006 0.34 11.3 0.7 3 23 664 684 663 684 0.94 14 18 0.00067 0.038 14.3 1.9 2 23 699 721 698 721 0.96 15 18 0.00011 0.006 16.8 0.6 1 23 727 749 727 749 0.98 16 18 0.0009 0.051 13.9 6.0 2 23 756 777 755 777 0.96 17 18 2.4e-05 0.0013 18.9 2.1 1 23 783 806 783 806 0.97 18 18 0.2 11 6.5 1.4 3 23 813 834 811 834 0.95
Sequence Information
- Coding Sequence
- ATGGCAGATACAGTGAAGAGTGAAGGCACAGATAATTTGGATTGGATAAAGGAGAAACTCCAGACAGTATGGACAGCTCCAAAGTTCTGTGGTCTGTGTCTAGAGAACAGGGGCAACTTCTCTTCTGTGGACATGGAATTTATGATCGGCCGCCAAACGTTTTCAAAATGTCTTCAAGACATTTTGAACTATGTGTTCAATGAAGATattGAACATATAATGTCAAGTCACTACTTATGCGATGGCTGTACCGAGAAGACGATACAAGCATATCTCTTCATGCACAACACAAGACAGTTGACAAAAATACTCAACAACTGTGTCTCGGACATTTATTCCAAAGTTGTTGATGTCAATTCACAGCTCGATGAAACAGTCACTACTGATGCTGCTAACGTAATGATTGTACTAGAAAATGACACAGAATTATGTAAAACAATCATCGATGTCCATTCTATGACCGAAGTCATCCCCACAGCAACCCATGTTCCTATGAAAGTTGAACAACCAGTGGTAAATCAACAGCCGAAAATTGTTCAAGTCACTAATTCACCAGTTCTGATCAAACGAAATTCGGAAGAAATCAAACATGAACCACAACCTAAAATCAGGAAAATTTCAAAACCTGATGGCACACCGAATATAAGTTTGAAAGAAGGTCACATTGTTATAAAACCTTTGAATTCAGTTCGCAATATAGCACCTAGATACAATACATATCAATGCATTCACTGTCCGGACATATTCACCTCGTACAGGTCCATGAAGGAACATGAAAAGGCCAAGCACAAAAAGGCTGTGTTCCGCTGCAACTTATGCGATAAGTCCTATAATACGCAACAATACTTGAACATTCATTATAAAACGCATGAGAGAGCTCGATGCAAACTCTGTCAGCTTATACTGCCAGAAGAAGAATTAATGGATCATTTGAAAGCAAATCATGCGAATTTGGTGTATCCATGCAAGTTTTGTGATTTAGTGTATTATACCCAGGAGTCTCTGGACACTCATTTCAAGATTACCCATCTAGTGAATGATACTAAGGCGAAATCTCAATGTGTCATGTGCTTACGTAACTTTGTTGAAGCCGAGTTAAAGAAACACAAGTGTAAATTTTCTTGCTCTGAGTGCTTTGTAATGCCGTGCGTACATTTCAGATATTTGAATTCTTATAGGGAACAAATCTTAAATCATGTGAATAAAATCAAATGCATAGATTGCGATTATGTGACGCGAAGGAAGGAGCATTTAATAGGACACGCGAACAGGGAGCATTTAGACCATCATCCATTTACATGTGCTGATTGTGGCCAGCAGTTTTACACTAAGTTAAGTTTGAAGACCCATATTGTACAGTTCCACGAAGATCTGTTCTGCCCGTACTGTGACTTTGAATTCAAAGATATGAGGACTTTGGAAAGCCATAAAAGGGCGTGCAAACTTGTCATACGGGCATTCACGTGTTCGCAGTGTGAGGCGTCATTTGACGTGGCTGAAGAACTGACTAACCATGAGAATCTGAAGCACAGCGAAGTTGTCTACGCATGTTCGCTTTGCAAGAGCAGATTTTTGACTGATTTAGAATTGCGAGAACATCGCGCAAGAGTTCATGGGGGCATTCAATGCAAGAAGAGAAGGAAACACATTGAATGCTCGCTGTGCAACATTATGTTCAAAAGTATAAAAGAAATGTTAGAGCATGAAAAGTCACATGACGAAAACGATGTCTATCCATGCAAAGTCTGCTCCAAGAAATACAAAACGTTAATGAAGTTATACATTCACAATCAGAGGCACTATACAGACAGGGTGAAATGTGATGGATGTAATAAGCGGGTGGCTGCGTCTTTCTATCCACAACATGCAGTCAGATGCCCGTATGCAAGGGAAACAACATTGGGTCATGTCTGTGAAGTATGTGGCAAGTCCTTCCATCTAgaatcattattaaaattacaccaGAAGGTCCACATGGACCCAGAACCATGCCCTCATTGCAACAAGGTTATAAAGCCTGCTAGCCTAAAGAAACATATGGAGCAGTTTCATGGAGAATCTCCAAAAGAGAGGCCTGCAGGCAGAGTTGTCATTGAATGTAATCTATGTGGACATGTAGTAAGAAAGAAATGTGATTTAGAGGCTCATATGAACCGATATCACTTGAAAATTAAACCATATGTCTGTCCAATATGTTCTAAAGATTTCTGTGGCAAAGTGAGATTGAAGGAGCATATAGCTACCCATACATCTGATAATAATTGCTTCTGTTCAATTTGTGGAAAGAAGTTTGCGAACCGTGTTTGTTTGAAGATGCATTTCAGAATGCATACTGGGGAGGCGCCTTATTCTTGTGACATTTGTGGTCAGAAATTCAGGTCTTCAAGTATGATGAAGACTCACAGATTAAAGAAACATTTGGAGAAAACAGTCAACTGTCCATTATGCGACAATATGTTCTTTATGGCGCGCGATATGCGACATCACTTCAAGAAAGCGCACTGGAAGTTCAAAGATGGCAGGCCATTTAATCCCAGAGATGTTGAGGAGTTGCCAAAAGAAATGTATTATCTATTTGAAGATGGGAGACTGCCGAAAATAACTCCAGATCAGTGA
- Protein Sequence
- MADTVKSEGTDNLDWIKEKLQTVWTAPKFCGLCLENRGNFSSVDMEFMIGRQTFSKCLQDILNYVFNEDIEHIMSSHYLCDGCTEKTIQAYLFMHNTRQLTKILNNCVSDIYSKVVDVNSQLDETVTTDAANVMIVLENDTELCKTIIDVHSMTEVIPTATHVPMKVEQPVVNQQPKIVQVTNSPVLIKRNSEEIKHEPQPKIRKISKPDGTPNISLKEGHIVIKPLNSVRNIAPRYNTYQCIHCPDIFTSYRSMKEHEKAKHKKAVFRCNLCDKSYNTQQYLNIHYKTHERARCKLCQLILPEEELMDHLKANHANLVYPCKFCDLVYYTQESLDTHFKITHLVNDTKAKSQCVMCLRNFVEAELKKHKCKFSCSECFVMPCVHFRYLNSYREQILNHVNKIKCIDCDYVTRRKEHLIGHANREHLDHHPFTCADCGQQFYTKLSLKTHIVQFHEDLFCPYCDFEFKDMRTLESHKRACKLVIRAFTCSQCEASFDVAEELTNHENLKHSEVVYACSLCKSRFLTDLELREHRARVHGGIQCKKRRKHIECSLCNIMFKSIKEMLEHEKSHDENDVYPCKVCSKKYKTLMKLYIHNQRHYTDRVKCDGCNKRVAASFYPQHAVRCPYARETTLGHVCEVCGKSFHLESLLKLHQKVHMDPEPCPHCNKVIKPASLKKHMEQFHGESPKERPAGRVVIECNLCGHVVRKKCDLEAHMNRYHLKIKPYVCPICSKDFCGKVRLKEHIATHTSDNNCFCSICGKKFANRVCLKMHFRMHTGEAPYSCDICGQKFRSSSMMKTHRLKKHLEKTVNCPLCDNMFFMARDMRHHFKKAHWKFKDGRPFNPRDVEELPKEMYYLFEDGRLPKITPDQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01361949;
- 90% Identity
- iTF_01361949;
- 80% Identity
- -