Sexi008776.1
Basic Information
- Insect
- Spodoptera exigua
- Gene Symbol
- -
- Assembly
- GCA_011316535.1
- Location
- CM022077.1:749240-753752[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 6.8 5.4e+02 1.7 0.1 1 16 78 93 78 95 0.82 2 19 0.58 46 5.1 1.5 1 23 239 262 239 262 0.93 3 19 1.2e-05 0.00096 19.8 3.4 1 23 267 289 267 289 0.99 4 19 0.0039 0.31 11.9 0.9 1 23 319 342 319 342 0.96 5 19 0.43 34 5.5 0.6 2 23 403 425 402 425 0.92 6 19 0.00037 0.03 15.1 1.0 1 23 431 454 431 454 0.93 7 19 0.007 0.55 11.1 0.3 3 21 459 477 457 478 0.93 8 19 0.002 0.16 12.8 0.2 1 23 486 509 486 509 0.95 9 19 4.4 3.5e+02 2.3 0.2 1 23 514 537 514 537 0.88 10 19 0.011 0.86 10.5 0.3 2 23 550 571 549 571 0.96 11 19 0.014 1.1 10.2 2.0 1 23 577 599 577 599 0.97 12 19 2.8 2.2e+02 3.0 0.2 2 13 605 616 604 621 0.84 13 19 6.2e-05 0.005 17.6 2.2 1 23 635 657 635 657 0.97 14 19 0.0099 0.79 10.7 0.7 3 23 663 683 662 683 0.94 15 19 0.0032 0.26 12.2 2.2 2 23 698 720 697 720 0.96 16 19 0.0002 0.016 16.0 0.6 1 23 726 748 726 748 0.98 17 19 0.00092 0.073 13.9 6.0 2 23 755 776 754 776 0.96 18 19 2.4e-05 0.0019 18.9 2.1 1 23 782 805 782 805 0.97 19 19 0.15 12 6.9 1.4 2 23 811 833 810 833 0.95
Sequence Information
- Coding Sequence
- ATGGCAGATACATCGAAGAATAAACCTTCTGAAAATTTTGAATGGATCAAACAGAGACTCCAGACAGTATGGACCGCTCCAAAGTTTTGTGGTCTCTGTCTGGAGAACAGAGGCAACTTCTCTTCCGTGGACATGGAATTTATGATTAGCCAGCAGACATATTCGAAATGTCTCCAAGATATCTTGAACTATGTGTTCAATGAAGAtATTGAACAGATCATGTCAAGCCATTACATATGCGATGGCTGCACAGAGAAGACAATACAGGCATATCTCTTCATACACAACACAAGACagttaacaaaaatacttaacaaCTGTGTCTCGGATATTTATTCCAAAGTTGTTGATGTCAACTCACAGCTCAATGACACAGTCACTGCTGATGCTGCTAACGTTATGATTGTACTAGAAAATGACAAAGAACTGTGCAAAACAATTATCGATATTCATTCTATGACGGAAGTCATCCCCACAGCAACCCATATTCCTATGAAAGTTGAACAACCAGAGGTGATTGAACCTAAGATTGTTCAAATCACTAATTCACAAGTTCTGATCAAGCAGAGTatggaagaaataaaaattgagcCAAAGCCCAAAGTTAGAAAAATTGCGAAACCTGACAGTACCCCAAACATTACTTTGAAAGAAGGTCACATTGTTATAAAACCTTTGAGTTCAGTGCGCAATGAAGCGCCACGGTATAACACATATCAATGCATCCACTGCCCAGATATATTCACTTCATATAGGTCGCTGAAGGAACATGAAAAGGCCAAGCACAAAAAGGCTGTTTTCCGTTGCAACTTATGTAATAAGTCATACAATACACAACAGTACTTGAACATTCATTACAAGACCCATGAGAGAGCTCGGTGCAAACTCTGCCAGCTTATAGTGCCAGAAGAGGAACTAATGGATCATTTGAAAGCAAATCATTCGAACTTGGTGTATCCATGCAAGTTTTGTGATCTAGTATACTACACCCAGGAGACTTTGGACACCCATTTCAAAATCACCCATCTAGTGAACGACACAAAGGCAAAATCTCAATGTGTGATGTGCTTACGTAACTTTGTTGAAGCAGAGTTAAAGAAACACAAGTGTAAATTTTCATGCTCAGAATGTTTTGTCATGCCATGCATACActtcaaatatttgaattcgTATAGGGAGCAAATCCTAAGTCATGTGAACAAAATCAAATGCATAGATTGTGATTATCTAACACGAAGGAAGGAGCATCTGATAGGACACGCGAACAGGGAGCATTTAGACCATCATCCATTTACATGCGCTGATTGTGGCCAGCAGTTCTACACTAAGTTAAGTTTGAAGACTCACATAGTGCAGTTCCATGAAGATCTATTCTGCCCGTACTGTGACTTTGAGTTCAAAGATATGAGGACATTAGAGAGCCATAAAAAAGCATGTAAACTTGTCATACGTGCATTCACATGTTCGCAGTGTGAAGCTTCGTTTGATGTCGCTGAAGAACTGACTAAACACGAGAATCTGAAGCATAGTGAAGTTGTCTTCGCGTGCCCGTTGTGCAAGAGTAGATTCTTAACTGATTTAGAATTGCGAGAACATCGAGCGAGAATTCACGGCGGCATTCAATGCAAGAAAAGAAGGAAACATATTGAATGCTCTCTGTGCAACATTATGTTCAAGAGCCTAAAAGAAATGTTGGAACACGAAAAGTCGCATGACGAAAATGACACGTATCCTTGCAAAATGTGCTCGAAGAACTACAAAAGCTTAATGAAGCTATACATTCACAATCAGAGACATTATACAGACAGAATAAAATGTCAGGGGTGTAACAAACGGGTGGCCACGTCATTCTACGCGCAACACTTAGTCAGGTGTCCGTACGCAAGGATGACTACATTGGACCATGTCTGTGAAGTTTGTGGCAAGTCTTTCCATCTGGAATCATTGTTGAAGTTACACCAAAAGGTCCACATGGACCGTGAACCATGTCCACACTGCAACAAGGCTATAAAGCCCGCTAGTCTGAAGAAACATATGGAACAATTTCATGGAGAAAATGCAAAAGAGAAACCTGCAGGCCGAGGACTCCTGGAATGTAGCCTGTGTGGCCATattgtaaaaaagaaatgtgaTTTAGAAGCTCATATGAACAGATATCATTTGAAAATCAAACCGTATATCTGTCCAATATGCTCCAAAGACTTCTGCGGCAAAGTGAGGCTGAAGGAGCATATAGCTACCCATACATCTGACAACAACTGTTTCTGTTCAATTTGTGGGAAGAAATTTGCGAACCGTGTGTGTTTGAAGATGCACTTTAGAATGCATACTGGTGAGGCGCCTTATTCCTGTGACATTTGTGGTCAGAAATTCAGGTCTTCAAGTATGATGAAGACTCACAGGTTAAAGAAACATTTAGAGAAGACTGTAAGCTGTCCGTTATGCGACAATATGTTCTTCATGGCCCGAGATATGCGACATCACTTCAAGAAAGCACACTGGAAGTACAAAGATGGCCGGCCATTTAATCCCAGAGATGTTGAGGAGTTGCCAAAAGAAATGTATTATCTATTTGAAGATGGTAGACTGCCGAAAATTACTAATGACTAG
- Protein Sequence
- MADTSKNKPSENFEWIKQRLQTVWTAPKFCGLCLENRGNFSSVDMEFMISQQTYSKCLQDILNYVFNEDIEQIMSSHYICDGCTEKTIQAYLFIHNTRQLTKILNNCVSDIYSKVVDVNSQLNDTVTADAANVMIVLENDKELCKTIIDIHSMTEVIPTATHIPMKVEQPEVIEPKIVQITNSQVLIKQSMEEIKIEPKPKVRKIAKPDSTPNITLKEGHIVIKPLSSVRNEAPRYNTYQCIHCPDIFTSYRSLKEHEKAKHKKAVFRCNLCNKSYNTQQYLNIHYKTHERARCKLCQLIVPEEELMDHLKANHSNLVYPCKFCDLVYYTQETLDTHFKITHLVNDTKAKSQCVMCLRNFVEAELKKHKCKFSCSECFVMPCIHFKYLNSYREQILSHVNKIKCIDCDYLTRRKEHLIGHANREHLDHHPFTCADCGQQFYTKLSLKTHIVQFHEDLFCPYCDFEFKDMRTLESHKKACKLVIRAFTCSQCEASFDVAEELTKHENLKHSEVVFACPLCKSRFLTDLELREHRARIHGGIQCKKRRKHIECSLCNIMFKSLKEMLEHEKSHDENDTYPCKMCSKNYKSLMKLYIHNQRHYTDRIKCQGCNKRVATSFYAQHLVRCPYARMTTLDHVCEVCGKSFHLESLLKLHQKVHMDREPCPHCNKAIKPASLKKHMEQFHGENAKEKPAGRGLLECSLCGHIVKKKCDLEAHMNRYHLKIKPYICPICSKDFCGKVRLKEHIATHTSDNNCFCSICGKKFANRVCLKMHFRMHTGEAPYSCDICGQKFRSSSMMKTHRLKKHLEKTVSCPLCDNMFFMARDMRHHFKKAHWKYKDGRPFNPRDVEELPKEMYYLFEDGRLPKITND
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01363365;
- 90% Identity
- iTF_01363365;
- 80% Identity
- -