Slit002279.1
Basic Information
- Insect
- Spodoptera litura
- Gene Symbol
- -
- Assembly
- GCA_002706865.1
- Location
- NC:8935456-8954888[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0046 0.26 11.7 3.5 1 23 254 276 254 276 0.98 2 11 0.054 3.1 8.3 0.2 1 23 283 305 283 305 0.98 3 11 4.6 2.6e+02 2.2 0.3 1 9 309 317 309 330 0.86 4 11 3.2e-05 0.0018 18.5 2.2 3 23 340 361 338 361 0.90 5 11 0.00052 0.029 14.6 3.4 3 23 369 390 368 390 0.95 6 11 2.6e-06 0.00015 21.9 0.1 1 23 403 425 403 425 0.96 7 11 2.3e-05 0.0013 18.9 0.6 1 22 431 452 431 456 0.94 8 11 0.00063 0.036 14.4 1.6 1 23 464 487 464 487 0.96 9 11 8.6e-06 0.00049 20.3 0.4 1 23 493 516 493 516 0.97 10 11 1.2e-06 7.1e-05 22.9 0.4 1 23 525 547 525 547 0.98 11 11 0.0097 0.55 10.6 0.4 1 19 553 571 553 576 0.90
Sequence Information
- Coding Sequence
- aTGAGCGATAGTGCTAACTGGAACTCGAATGGTCATGAGGAAAAaccacaaatattaaaaaaatactgttttgtaTGTCTATGTAGTGATGAGGAGAAGAATCTACAGAAATATGTGTTTCAATGCTGTTCCTTGAAAGAAGTTTTACAGATGGATAGCATGATGCTGTGTTACCTCTGTAGACGGATGGCTCAGTATGCTGAAACCTTTACGCAGAGTGTGCAAAGTAATCAGTTGTTACTGGAGAACTTTcaaaatATAATGGACGAGACGTTAAAATCAGTTCGAACACAGATGCACCCTCTAGTCAATTTATCTTCTGTGTCATTAAATGTCATAGATGTCACCCAGAAGGACGGGTCAGGATTTGAGGAGTCCTTCTCCGTTGTGTGTTCTAGAAGTAGAGGTAGTATGCAGATCAAGGTGGAGATGAAAGAAGAAGATTTCATGGAGCAATTAGAGGGAGAATTTGTTGGTGGTgatgATTACCAAGAACCATTCGTAAAAGATGAGGATGACGCATTTAATCTGGATACTTCTTTGAAAGAAGAATTAGAACTAGAAGACATTGATAGCTTAAACCTTATGGCCCTCAAATCGACgcttaaaaagaataaaattaataagaaaaagactAAAATCAAAAGAGAAGATGATTTTCCAGGCAACTCTAAGATACAAAGAATTTACATAACTCGGGAACAGTGTTTAGAAGAAAAAGCGAAAATGTTACAGGACCCCAAGTACCTAGACGCAGCCTTTAAATGTGATGACTGCGCCAAACACTTTACTTTCAAAGAAATCTATGAAAAGCATATGGAGAAACATAGTcagagTATAGGAGACTACGAGTGCGACATTTGCAAGCTAAGAATGGAATCCGAAGATAAATTAGTTGGCCATATGAAATATCACACAAACCGCTACAAATGTCTAGAATGTGGTCTAACCCGAACCTGCAGGCGAACCATACTGGATCACGTCTCCGCATATCACAGCGAGGGAGTCTTCCATTTGTGTCCATATTGCAGCAAGAGTTTCAAACGCCAGTCGTCAATCCGTAAGCACGTAGCGCAGATGCATCGTACTCGTGCGCGCGTCGCGTGTGCGCACTGCCATCGCACGTACAAGGATAACAACGCATTGCGCACGCATATGTTACTGAAACATGCCAAAGAGATATCAGCTCGTGAGATAAGCAAGAAGTATGCGTGTCAGGAATGTGGCATGGCGTTCAAGACACCTTCGCAGTTGAAGATCCATGGACTCAAGCATACTGACTCTAGGGACTATTACTGCGTCGAGTGTGATAAGAGTTTCAAATCGGATGCCACATTGAAGACTCATTTAAAGACTACAGCTATACATACCAATTATTTAGAGTTACCGTTCGCATGCCAACATTGCGACAAGCGTTTCGCGATCCGTCGCGACGTGGAGCGACATACTAACAGAATACATCTTAATGTCAAGCCGTACTCCTGTGACAAGTGTGATAAGaaCTACGTGAACTCATGGTCCCTGAAACAGCATCAGTTGATAATCCATGAAGGGTACAAGCGACCTCTAGCGTTTCCGTGTTCCATGTGTGATAAGATCTTTGATcGAAAACAAGTATTGAAGGCTCATATTCGAACCCACACCGGCGAGCGGCCGTACCAGTGCAGCAAGTGTCCAGCACAGTTCAGTCAGTCCAGTATACTACGGACCCACGATAGATTAATACACCTTAAACTAACTAGAGATGGAAGACCTAAGGTCAAATAA
- Protein Sequence
- MSDSANWNSNGHEEKPQILKKYCFVCLCSDEEKNLQKYVFQCCSLKEVLQMDSMMLCYLCRRMAQYAETFTQSVQSNQLLLENFQNIMDETLKSVRTQMHPLVNLSSVSLNVIDVTQKDGSGFEESFSVVCSRSRGSMQIKVEMKEEDFMEQLEGEFVGGDDYQEPFVKDEDDAFNLDTSLKEELELEDIDSLNLMALKSTLKKNKINKKKTKIKREDDFPGNSKIQRIYITREQCLEEKAKMLQDPKYLDAAFKCDDCAKHFTFKEIYEKHMEKHSQSIGDYECDICKLRMESEDKLVGHMKYHTNRYKCLECGLTRTCRRTILDHVSAYHSEGVFHLCPYCSKSFKRQSSIRKHVAQMHRTRARVACAHCHRTYKDNNALRTHMLLKHAKEISAREISKKYACQECGMAFKTPSQLKIHGLKHTDSRDYYCVECDKSFKSDATLKTHLKTTAIHTNYLELPFACQHCDKRFAIRRDVERHTNRIHLNVKPYSCDKCDKNYVNSWSLKQHQLIIHEGYKRPLAFPCSMCDKIFDRKQVLKAHIRTHTGERPYQCSKCPAQFSQSSILRTHDRLIHLKLTRDGRPKVK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01361913;
- 90% Identity
- -
- 80% Identity
- -