Sexi012645.1
Basic Information
- Insect
- Spodoptera exigua
- Gene Symbol
- -
- Assembly
- GCA_011316535.1
- Location
- CM022073.1:217962-235801[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.39 31 5.6 6.0 1 23 253 275 253 275 0.98 2 11 0.067 5.3 8.0 1.2 1 21 282 302 282 304 0.95 3 11 8.2 6.5e+02 1.5 0.9 1 8 308 315 308 320 0.90 4 11 3.5e-06 0.00028 21.5 2.8 1 23 337 359 337 359 0.95 5 11 0.00022 0.017 15.9 1.6 3 23 367 388 365 388 0.94 6 11 6.3e-07 5e-05 23.8 1.1 1 23 401 423 401 423 0.97 7 11 5.2e-06 0.00041 21.0 0.7 1 22 429 450 429 454 0.94 8 11 7.6e-05 0.006 17.3 2.5 2 23 463 485 462 485 0.96 9 11 1.5e-05 0.0012 19.5 0.7 1 23 491 514 491 514 0.96 10 11 7.6e-07 6.1e-05 23.6 0.5 1 23 523 545 523 545 0.98 11 11 0.00034 0.027 15.2 0.4 1 23 551 574 551 574 0.97
Sequence Information
- Coding Sequence
- atgAGTGGTGCAAACTGGAACTCAGAAAGTTCTGAGGAAAAACaacaagtattaaataaatactgctTTGTATGCTTATGTACTGATGAGGAGAAGaatctaaagaattatttctttCAATGCTCTTCCTTGAAAGAAGTACTacagATGAACAACATGGTGCTTTGTTACCTGTGTAGGAGGATGGCGCAGTACGCTGAAACCTTTATACAGAGCGTACAAAGTAATCAGTTGTTACTGGAAAACTTTCAAAATgtAATGGATGAAACGTTGAAATCAGTGAGAACTCAGATGCATCCGCTAGTCAATTTATCATCTGTGTCATTAAATGTGATAGATGTGATGGAGAATGATGGCTCAGGTCTTGAGGAGTCCTTCTCCGTAGTATGTTCTAGAAGTAATAGTGCAGTGCAGATCAAATTGGAAATGAAGGAAGAAGAATTTATGGAGCAATTGGAGGGAGATTTAGTTAGCGGTTGTGATgATTACCAAGAGCCATTCGTAAAAGATGAGGAAGACGCATTCACTTTGGATAGTTCCTTGAAAGAAGAATTACAACTAGAAGACCTTGATAGCCTAAACCTTATGACCCTCAAAGCGACGCTtaagaagaataaaattaaaaagaaaaagacaaaagtaaaaaaagaagatTATCGAGatagCGATAAGATTCAGAAGTTTTTCATTACTAGAGAACAGTGCTTAGAGGAGAAAGCTAAAATGTTGCAAGACTCCAAGTATATCGAGGCAGCCTTCAAATGTGCAGATTGCGCCAAACATTTTACCTGCAAACAACTATATGACAAACACATGGAGAGACATGATCAGAGTATAGGAAATTACGAATGTGATATTTGCAAGATAAGAACGGAGTCGTTAGACAAATTAGTTTCTCATTTGAAATGTCACACAAAtcGCTACAAATGTCGGGAATGTGGACTAGTCCGAGCTTGTAGGACAACGATTCTAGATCACTTCTCCGCATATCACAGTGAGGGAGTCTTTTACATTTGCCCTTATTGCAGCAAGACTTTCAAACGTCAGGCATGTCTCCGCAAGCACGTGTCGGGGCACCGTTCGCGCGCCCGAGTCCACTGCGTGCATTGCCAGCGATCCTACAAAGACGCAGATGGTCTACGGGCCCATATGCTATTGAAACACGCCAAAGAGATATCAGCTCGGGAGGTAAGCAAAAAGTATGTCTGCCAAGAGTGCGGCACGGCGTTCAAGACACCTTCGCATCTGAAGACCCACGGACTTAAGCATACTGACTCCCGGAACTATTATTGCGTCGAATGTGACAAGAGTTTCAAATCGGCTGCGACGTTGAAGACACATTTGCAGACTACAGCTAAACATACTAAATATATAGAGTTACCGTTAAAATGCCAACATTGTGATAAGCGTTTCGCGATCCGTCGCGACCTGGAGCGACACACAAACAGAATACATCTTAAACTCAAACCTTTCTCGTGTGACAAGTGTGACAAGAATTACGTCAACTCATGGTCGTTGAAACAGCATCAGATGTTGATCCACGAGGGGTACAAGCGGCCCCTGGCGTTCCCGTGTTCCATGTGTGATAAAGTCTTTGATCGAAAGCAAGTTTTGAAGGCTCATTTGCGAACCCACACCGGCGAGCGTCCCTACCAATGCAGCAAATGTCCAGCCCAGTTCAGTCAATCCAGCATTTTACGGACCCACGTTAGACTTATACATCTAAAATTGACTAGGGATGGTCGACCTAAGGTCAAATGA
- Protein Sequence
- MSGANWNSESSEEKQQVLNKYCFVCLCTDEEKNLKNYFFQCSSLKEVLQMNNMVLCYLCRRMAQYAETFIQSVQSNQLLLENFQNVMDETLKSVRTQMHPLVNLSSVSLNVIDVMENDGSGLEESFSVVCSRSNSAVQIKLEMKEEEFMEQLEGDLVSGCDDYQEPFVKDEEDAFTLDSSLKEELQLEDLDSLNLMTLKATLKKNKIKKKKTKVKKEDYRDSDKIQKFFITREQCLEEKAKMLQDSKYIEAAFKCADCAKHFTCKQLYDKHMERHDQSIGNYECDICKIRTESLDKLVSHLKCHTNRYKCRECGLVRACRTTILDHFSAYHSEGVFYICPYCSKTFKRQACLRKHVSGHRSRARVHCVHCQRSYKDADGLRAHMLLKHAKEISAREVSKKYVCQECGTAFKTPSHLKTHGLKHTDSRNYYCVECDKSFKSAATLKTHLQTTAKHTKYIELPLKCQHCDKRFAIRRDLERHTNRIHLKLKPFSCDKCDKNYVNSWSLKQHQMLIHEGYKRPLAFPCSMCDKVFDRKQVLKAHLRTHTGERPYQCSKCPAQFSQSSILRTHVRLIHLKLTRDGRPKVK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01363345;
- 90% Identity
- -
- 80% Identity
- -