Slit013374.1
Basic Information
- Insect
- Spodoptera litura
- Gene Symbol
- -
- Assembly
- GCA_002706865.1
- Location
- NC:8473762-8478728[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00075 0.042 14.1 0.2 2 23 200 222 199 222 0.92 2 12 1.8 1e+02 3.5 0.3 6 23 232 249 230 249 0.92 3 12 0.0055 0.31 11.4 0.6 1 23 285 308 285 308 0.90 4 12 1.3 74 3.9 0.3 5 23 317 335 315 335 0.94 5 12 0.00028 0.016 15.5 0.5 2 23 342 363 341 363 0.96 6 12 0.00093 0.052 13.9 2.4 1 23 371 393 371 393 0.96 7 12 5.3e-05 0.003 17.8 0.7 1 23 402 425 402 425 0.98 8 12 0.00019 0.011 16.0 0.2 1 23 431 453 431 453 0.97 9 12 2e-06 0.00012 22.2 3.5 1 23 459 481 459 481 0.98 10 12 0.00033 0.019 15.3 1.0 1 23 486 508 486 508 0.98 11 12 2.6e-06 0.00015 21.9 4.2 1 23 514 536 514 536 0.97 12 12 0.00015 0.0086 16.3 2.7 2 23 543 565 542 565 0.95
Sequence Information
- Coding Sequence
- ATGGCTTCGAACATGAAAGATTTGTGTAGATTATGTGCTAAGAAAGATGGGTTTCTGAAAGACCTACTggacgaaaataataaaaatattctgaaactGTTGCAAGATTTTGTTCAAATAATCATATATGAAAATGATGTTTTGCCAACAAAAATTTGTATGAACTGTGAAGTCAAAATGCAGtccattgaattatttattttggaatgCATAAAAGCACAGGATACGTTAAAAAAGATGCATGATGGAAATGTGGATGACATCAAGCTTGAATGTCCTCAGGCCCCTATTGAATTCAACATCCATATAAAATCTGAGGTTAAAGATGAAGTATCTGCTGAAGATATTGTATGTGCATTGAACAATGATGCATCACTATCAATGATTGATATCTTCCCAGACAGACAAAGTGGTGATGATGAAGTAGACATACacaatgatgatgaagatgattaTCTTGATGATATTGCTATAGCATCATTGAAACCAGTCAAACGACATcgcaaaaaaagaaaagaaatgacAGAAAAAGAGACAGAAGAGTTCAATAATGTTCTTAAAAAGCCTTGTTTAAAAGTGAAGGATTTTGTAAAATTGCAGTGTGAGTTGTGTGGAGAGAAATCAAAAACATGGAGCGGGTTACGAGTACATTTTCTAAATGAGCATAACCATGAACCATATGTGTACTGCCTCTGTGGCTTTGCAGTAAAATCGAAAAGTGTGCTTTACAAACATGTATCAGACCATAAAATAGAAAGTAGGAAAGTAAGAAAGAATTCAGATGaaactgatgatgaagaaggaaaaaagaatttaaaatatgataGTTTGAATGTGAAAGACTTTATCAGATTTTTGTGTTCTCATTGTGAACAGGAGTTTGCGAGCTGGTATAGACTGAAAGAGCACTCTGAAGTGGCACATAAAGTGTCGCCTATAGTGACTTGTATCTGTGGCATCACACTTAAATCTAAGTCTGTTATGTACAAGCATGTACAAGACCACAGGAACCCTAATTTACTGTCctGTGATAAGTGCCCAcgtgtaacaaaaacattagcTGCCTTAAATAAACATAAGATGCGACACATACCTAAGTCAGAGAGGAAGTTCTGTTGTGCATCATgtgaaaaaatattctattcaaAGGAAGCATTGAAATCTCACGAAAGATCTCACATACCTATAGAGGAGCGGAAAATATACCGATGTGATATATGCAACATGAAgtTTACGACTCGTTCGTCGGCAGCGTCTCACAAGCGCGTGGTGCACGACAAGATCAAGGGCTACGTCTGCGACCTGTGCGGGTACGCGTGCGGGACTAATGGAGAGCTGCGCCAGCACCGCGCTATACACAGCGACGACAAGCCTTTCGTTTGCAGGAAATGCTCTAAATCATTTAAGACTTATTCGAACTTGAAGACACATTTGGATACTCATGAAGACACGTCGTATGAATGCTACATCTGTAGGCGAGTGCTGAATAGTCGGCGCACACTGCGCAAACATCTATTAGTACACGAAGACAAATGTAGGCATGTGTGCTCCTACTGCAACAAGGCCTTCAAGAGGAGACAAACTTTGAAGGTGCACATGTACACACACACGGGCGACAAACCACTCTCGTGCAAATGGTGCGACGAACGGTTCTCGTACGCATCCACGTTGCGCTCGCATCGCCTGCGTTGTCACCCGGACAAGATGGCACCGCTACCTACGCACGAAACTTATTCTGCCTATGGTCAACTCAGTATGCAAGAGAACTATATCAAGGATGTGCCACCTGTGAACGTACCGGTGCCGAAGAACGAAGTCGAGGCTATGTAG
- Protein Sequence
- MASNMKDLCRLCAKKDGFLKDLLDENNKNILKLLQDFVQIIIYENDVLPTKICMNCEVKMQSIELFILECIKAQDTLKKMHDGNVDDIKLECPQAPIEFNIHIKSEVKDEVSAEDIVCALNNDASLSMIDIFPDRQSGDDEVDIHNDDEDDYLDDIAIASLKPVKRHRKKRKEMTEKETEEFNNVLKKPCLKVKDFVKLQCELCGEKSKTWSGLRVHFLNEHNHEPYVYCLCGFAVKSKSVLYKHVSDHKIESRKVRKNSDETDDEEGKKNLKYDSLNVKDFIRFLCSHCEQEFASWYRLKEHSEVAHKVSPIVTCICGITLKSKSVMYKHVQDHRNPNLLSCDKCPRVTKTLAALNKHKMRHIPKSERKFCCASCEKIFYSKEALKSHERSHIPIEERKIYRCDICNMKFTTRSSAASHKRVVHDKIKGYVCDLCGYACGTNGELRQHRAIHSDDKPFVCRKCSKSFKTYSNLKTHLDTHEDTSYECYICRRVLNSRRTLRKHLLVHEDKCRHVCSYCNKAFKRRQTLKVHMYTHTGDKPLSCKWCDERFSYASTLRSHRLRCHPDKMAPLPTHETYSAYGQLSMQENYIKDVPPVNVPVPKNEVEAM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01361917;
- 90% Identity
- iTF_01361917;
- 80% Identity
- -