Sexi007609.1
Basic Information
- Insect
- Spodoptera exigua
- Gene Symbol
- -
- Assembly
- GCA_011316535.1
- Location
- CM022051.1:8486451-8491096[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0017 0.14 13.1 0.1 2 23 199 221 198 221 0.92 2 12 1.9 1.5e+02 3.5 0.3 6 23 231 248 229 248 0.92 3 12 0.004 0.32 11.9 1.8 1 23 284 307 284 307 0.93 4 12 1.3 1.1e+02 3.9 0.3 5 23 316 334 314 334 0.94 5 12 0.00028 0.022 15.5 0.5 2 23 341 362 340 362 0.96 6 12 0.0012 0.097 13.5 2.6 1 23 370 392 370 392 0.96 7 12 5.5e-05 0.0043 17.8 0.7 1 23 401 424 401 424 0.98 8 12 0.0002 0.016 16.0 0.2 1 23 430 452 430 452 0.97 9 12 2.1e-06 0.00017 22.2 3.5 1 23 458 480 458 480 0.98 10 12 0.00034 0.027 15.3 1.0 1 23 485 507 485 507 0.98 11 12 2.6e-06 0.00021 21.9 4.2 1 23 513 535 513 535 0.97 12 12 0.00016 0.012 16.3 2.7 2 23 542 564 541 564 0.95
Sequence Information
- Coding Sequence
- ATGACTACGGACATGAAAGATTTGTGTAGATTATGTGCTAAGAAAGATGGGTTTTTGAAAGACCTATtggataaagataaaaaaaatattctgaaaaTATTGCAAGATTTCATTCAAATTGTTgtATATGAAAATGATGTTTTaccaacaaaaatatgtatgaattGTGAAGTCAAAATGCAGTCcattgaattgtttattttggaATGTTTCAAAGCCCaggaaacattaaaaaagatgCACGAAGAAGTTGTGGATCAAATCAAACGTGAATGTCCACAGGCCCCTATGGACTTTAACGTCCAAATAAAATCTGAGGTCAAAGATGAAGTTTCTGCTGAAGATATTGTATgTGCATTGAACAATGACACATCACTATCCATGATTGACGTCTTCCCAGACGGACAAAGTGTTGATGATGAAGTAGACATgcataatgatgatgatgattatctTGATGATATTGCTATAGCATCATTGAAACCAGTTAAACGTCACCgggaaaaaagaaaagaaatgacagaaaaagaaacagaagagttcaataatattcttaaaaagCCTTGTCTAAAAGTGAAAGATTttgttaaattgCAGTGTGACTTATGTGgagaaaaaataaagacatgGAGCGGACTAAGAGTACATTTTTTAAACGAGCATAACCATGAGCCATATGTTTACTGCCTGTGTGGCTTTGCAGTAAAATCTAAGAGTGTGCTTTACAAACATGTATCAGATCACAAAATAGAGAGTAGGAAAGTAAGAAAGAATTCAGAAGAAACTGATGATGAGGAaggaaaaaagaatttaaaatatgataacTTAAATGTGAAAGATTTTATAAGATTTATATGTTCTCATTGTGAACAGGAGTTTGCGAGTTGGTACAGACTGAAAGAGCACTccgaaaaaaaacataaagtgtCACCTATAGTGACTTGTATCTGTGGCATTACATTAAAATCTAAGTCTGTTATGTACAAGCATGTACAAGACCACAGAAATCCCAATTTACTCTCCTGTGATAAGTGCCCTCGTGTAACGAAGACATTAGCTGCCTTAAATAAACATAAGATGCGACACATACCTAAGTCAGAGAGGAGGTTCTGTTGTGCATCATGTGAAAAAATATTCTACACAAAAGAAGGATTGAAATCTCACGAAAGATCCCACATACCAATAGAGGAGCGTAAAATATATCGGTGTGATATATGTAACATGAAgtTTACGACTCGTTCATCGGCAGCGTCTCACAAGCGTGTGGTGCACGACAAGATCAAAGGCTACGTGTGCGACCTGTGCGGGTATGCGTGCGGTACTAATGGCGAGCTGCGCCAGCACCGCGCTATACACAGCGATGACAAGCCGTTCGTCTGCAGGAAATGCTCTAAATcTTTTAAGACTTATTCAAACCTGAAGACGCATTTGGACACTCATGAAGACACGTCGTATGAATGCTACATCTGTAGGCGAGTGCTGAACAGTAGGCGTACTCTGCGCAAACATTTGTTAGTACATGAAGACAAGTGTAGGCATGTTTGTTCCTACTGCAACAAAGCGTTCAAGAGGAGACAGACTTTAAAGGTCCACATGTACACACACACGGGTGACAAGCCACTTTCATGCAAATGGTGCGACGAACGGTTCTCATACGCATCAACGTTGCGCTCACACCGCTTGCGTTGTCACCCGGATAAGATGGCCCCGTTACCTGCGCACGAAACTTATCCTACCTATGGTCAAATTAGTATGCAAGAGaACTATATCAAAGATGTGCCACCTGTAAATGTACCGGTGCCGAAGAATGAAGTGGAGGCTAtgtag
- Protein Sequence
- MTTDMKDLCRLCAKKDGFLKDLLDKDKKNILKILQDFIQIVVYENDVLPTKICMNCEVKMQSIELFILECFKAQETLKKMHEEVVDQIKRECPQAPMDFNVQIKSEVKDEVSAEDIVCALNNDTSLSMIDVFPDGQSVDDEVDMHNDDDDYLDDIAIASLKPVKRHREKRKEMTEKETEEFNNILKKPCLKVKDFVKLQCDLCGEKIKTWSGLRVHFLNEHNHEPYVYCLCGFAVKSKSVLYKHVSDHKIESRKVRKNSEETDDEEGKKNLKYDNLNVKDFIRFICSHCEQEFASWYRLKEHSEKKHKVSPIVTCICGITLKSKSVMYKHVQDHRNPNLLSCDKCPRVTKTLAALNKHKMRHIPKSERRFCCASCEKIFYTKEGLKSHERSHIPIEERKIYRCDICNMKFTTRSSAASHKRVVHDKIKGYVCDLCGYACGTNGELRQHRAIHSDDKPFVCRKCSKSFKTYSNLKTHLDTHEDTSYECYICRRVLNSRRTLRKHLLVHEDKCRHVCSYCNKAFKRRQTLKVHMYTHTGDKPLSCKWCDERFSYASTLRSHRLRCHPDKMAPLPAHETYPTYGQISMQENYIKDVPPVNVPVPKNEVEAM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01363344;
- 90% Identity
- iTF_01363344;
- 80% Identity
- -