Slit010134.1
Basic Information
- Insect
- Spodoptera litura
- Gene Symbol
- clz9
- Assembly
- GCA_002706865.1
- Location
- NC:5373997-5376130[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.3e-08 5.1e-06 25.9 0.0 1 38 15 53 15 57 0.93
Sequence Information
- Coding Sequence
- ATGGTTCGAGATTATAAGAGACGTACTAATAGAGGAGGGTGGAGTgaagaacaaattaaattagCCATTCAAGCAGTTTTAGATGGAAAAAATGGTTATAAATCAGCCAGCAAGACTTATAATGTCCCTCAAACAACACTCGAGCGTAAAGTTAACCAAGCCAGAAAAAGAGAGAATAATATACTAAATGTCAAAGTTCCGTTGGGTCCGATTACAACAGTATTTTCAGAAGAAGAAGAACAAATCCTTGTAACTTATTTAAAGGAAATGGAAGGAAGATTGTTTGGGTTGTCAACATCCGAATTACAGAAGTTAGCCTATGAGTTAGCAGTCCGTAACAACAAACAGCATAAATTTAATGAACTCAaggaaaaggccggtaaagactGGCTGCGTGGATTTCTGCACCGTCATCCTGACTTGAGTTTACGCAAGCCAGAAAACACGTCTGCGGCTCGTGCTGCTGGGTTTAATAGATTGTCTGTTGGTAAATACTTCGAACTGCTTGGAAAAGCACTTGATGATAACCCTTTTACTCCAGATAGGATTTATAATTGTGACGAGACAGGTATTTCAGTGGTGCCAAAATCACGATCCAAAGTGATTGCAGCAACAGGTAAAAAGCAAGTGGGAGCCTTGACATCGGCGGAACGAGGTACAACTATTACTATTGAAATTTGTTTTAACGCTGCAGGGACATACCTTCCTCCTATGTTTATATATCCTAGAAAACTTATGAAGCCCGAACTGCTAAATGGAGCCCCACCAAATTCATGGGCAGAATGTTCAGATTCTGGGTGGATCACTGCAGATATTTTCTTACGATGGTTTCAGAAGTTTGTGAAACTCACCAATGCTTCTAAAACAAACCCAGTTATGCTGATTTTAGATGGTCATGCCTCTCACACCCAAAATTTGCAATTAGTTGATAACGCACGTGAACATGGCGTGACAATAATATGCTTCCCACCACACACTACTCACAAACTACAGCCAGCTGATGTTGGTTTTATGCGGCCCTTGAGTATCTTTTATGATCAGGCTCTAACAGCATGGTTGAGATCAAATCCTGGGAAAGTAGTTTCCCAACTTCAAGTGGCTGAACTCTTTGGGCAAGCATTTATTCGGGCAGCGACAATGTCAACTgcaataaatgcttttaaaacATGTGGAATTTCACCTTACAATCCACACGTTTTTACCGAAGACGACTTCATTGCTGCAGAGGCCACTGAAATCGAATTGAACGCTGAAACGGAACCCGAAGCTGATATAAATCCCACGCCGTCTGTTGCAGTTATCCCACAAGAAACACTGGCAGTTCCTTCAACAATAATATCGCCTGATCCTCAAATGGCCACCGGCAGTGCCTTAAATTCTTCAGCAAACAATGTAGATCCAGTGGCTCCCACAACCTCAAATTTAGTTCAGCAAGCACCAGGAAATGATTCTTTGGATACTTCATTCAATCTGGTAAGCCCGAAACAGTTAATGCCTTATCCACGAATGGCCGAAAAAAGACCTAGACAAGTTCGAAGAAGAGGAAAAGCAGCTATTATCACTGCTTCTCCATATAAAGCAGTATTAGAAGAGAGGCAAAACAGTAAGAATTCGACACCAaaggtaacaaacaaaaagaaaatgaaaaaaacaacCAAGAGATCTAAAAAAGAGAAGAAAGCTGATGATGGCGCTGAGACATCAGATAACGAAGATACAGAATGTCTGTACTGTCAAGGCCTGTATTCAGAGTCTAGTGAAGGATGGATCACTTGCCAGACTTGCGGTAAATGGGCTCATTGTGGGTGTGCAGGAGTGGACGATAACGATGACGAAGCTGTCCATACTTGCCCGTTTTGCGAAGACTcttaa
- Protein Sequence
- MVRDYKRRTNRGGWSEEQIKLAIQAVLDGKNGYKSASKTYNVPQTTLERKVNQARKRENNILNVKVPLGPITTVFSEEEEQILVTYLKEMEGRLFGLSTSELQKLAYELAVRNNKQHKFNELKEKAGKDWLRGFLHRHPDLSLRKPENTSAARAAGFNRLSVGKYFELLGKALDDNPFTPDRIYNCDETGISVVPKSRSKVIAATGKKQVGALTSAERGTTITIEICFNAAGTYLPPMFIYPRKLMKPELLNGAPPNSWAECSDSGWITADIFLRWFQKFVKLTNASKTNPVMLILDGHASHTQNLQLVDNAREHGVTIICFPPHTTHKLQPADVGFMRPLSIFYDQALTAWLRSNPGKVVSQLQVAELFGQAFIRAATMSTAINAFKTCGISPYNPHVFTEDDFIAAEATEIELNAETEPEADINPTPSVAVIPQETLAVPSTIISPDPQMATGSALNSSANNVDPVAPTTSNLVQQAPGNDSLDTSFNLVSPKQLMPYPRMAEKRPRQVRRRGKAAIITASPYKAVLEERQNSKNSTPKVTNKKKMKKTTKRSKKEKKADDGAETSDNEDTECLYCQGLYSESSEGWITCQTCGKWAHCGCAGVDDNDDEAVHTCPFCEDS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01094862;
- 90% Identity
- iTF_01028211; iTF_01028212; iTF_01338627; iTF_01338690; iTF_01338628; iTF_01338629; iTF_01338630; iTF_00710143; iTF_00710144;
- 80% Identity
- -