Slit008207.1
Basic Information
- Insect
- Spodoptera litura
- Gene Symbol
- clz9
- Assembly
- GCA_002706865.1
- Location
- NC:13269876-13309962[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2e-08 7.9e-06 25.3 0.0 4 42 44 82 41 85 0.91 2 2 1.4 5.5e+02 0.2 0.0 26 37 812 823 810 828 0.81
Sequence Information
- Coding Sequence
- ATGTCTATGGTATTCCTCAGTTACTGCTTAATTGTTGCATTTTTTGTGTTgacaaaatttatttcttttttcagagTCATCATGCCTcgtacttatataaaaaagaaaaataaaacatacactTCTCAAGATTTAGCCACTGCCATACAGAAAGTAAGAAATGGGGAGCTTACCGCATATGCTGCAGCACAAATGTACAAGATTCCAATGACCACTCTCCATGACCATGTCAAAACTAAAGATACTCTTAGACAGAATGCAGGTAGACCAACTGTTCTACCTGTAGAAGACGAAAAAAAGTTAGCAAGCACCATCATAGTCATGGAGAAATGGGGATTTGGGCTCTCAAGATCAGAAATATTGGAGATTGTGGCTGAATATGTACGCGTAAACAATATTCAGACACCATTTAAGAATAACACGCCTGGACCAGATTGGTTTATCAACTTCCGAAAACGTCACGGTTTGTCTATCAAAAAAGCACAACCCGTAGAATATGTGCGAAGAAAAATGACAGATCCATTCGTCATCGCTGAATATTTTGATTTGCTGAATAAGACCTTAAAAGATTTAAGTCTTTTAGAAAATCCAGAATCAATTTGGAATTTGGACGAAACATCGTTGTGTCTGGATCCGACCAAAACAAAAGTGGtcggaaaaaaaaataaaccatgtGCAAGGACCACCTATGGAAGTGGAAAGGAAAACATCACTGTGTTAGCAGGAGCAAGTGCCAGTGGTAAAAAGTTGCCGCCTTTGATTATTTTCAAAGGAAAATTTGTTTGGGACCAATGGATGGCTGATCTTAATAAAGATGATTACGATTTCGAATTAACATATGCTGCAAGTACTAAAGGTTGGATGGAATCAGAAATTTTtcacaattattttgaaaaagtacTCATCCCAAGTCTCGGCGAAAAGCGACCCGCCCTTATAATTTATGACGGGCATTCAACGCACGTCGATGCCAGGGTTGTGGAGCTTGCGGTCCGAAACAATATAACTATCATCAAATTACCCCCACATACATCACATTTGTTGCAACCGCTTGATATATCAGTATTTAAATCTTTCAAAGCAATATGGGATGCAAAACTGGTCGAGTGGCAGAGAAGAAACGTTGGTACGAAAATGCCAAAAAACGTTTTCGCAAAAACTATGGCAGATACTTGGCAACAAACGAACCCCGAAGTTATAAAGAGTGGATTTAAAAAGGCAGGAATATATCCTTTCAATGCAAATGTCATACCTATTGATAAATATGATCCAGACGCTTATCAAAGATATAAGAAAACTTTACTTACCCACACACTCAACCAGCCAAAGACACTCAAAGAAATATGCATTGAATCATTCAACAATCAGTTTGCAACAGCTAATGAAACTATAGAAATAACAGACAATAATTACGTTGCCCTGCTATCAGAACAATCAAGAAATAATGCCCAAATGTTGCCCTTTGAAGCCAGACACCCGAGCCAAGTACCCGTATGTTTGCAGAATTCTATGCCaactaaatctaaaataaatattatatcaaacatAGTCATAAAGAAAGCATCACAAATACCACTTCAATACCCATCACAACTCGAACCATCAGTCTCATTTGAAGAACTACCTGAACAATCAAGAAATGATACCCAAATATTGTCCTTTGAAGCCAGACACCCGAGCCAAGTACCAGCATGTTTGCAGAATTCGAAGCCaacaaaatctaaaataaatataatatccaaCATAGTAATAAAGAAAGCATCGCAAGTACCACTTCAAAACCCATCACAACTCGATCGATCAGTCTCATTTGAAGAATTATTGCTGCGAAAAATTCAACAAGACAAAAAGAATTGtgttccaacaaaaaaaaaacgtgtcacAAAAGGTGCGGAAGTAATAACTGCAGATTTAGGAAAGAAAATTTTAGAAGAAGTGAAAGAAACGAAAAGTAAGAAAATTGCAACTAAAACCAGTAAAGCTCATGATAAACGAAAACGTAAACGGGAACCTTCCTCTGATACCACAAGTATATCCGATATCATCAGTAATCATAGCGATTCTGATATTATTGATTGTATCGATTTTGAAGACTTGGACGATTGcgaagataattttaatttgtaccaGGAGGAGACAAGTTCACAGAAATCAAGAAAAGATAGGAAGTGTGTTATAAACATGAAAACCGATAAAAATATAACCAATGAAAAGGTACTCACTGACAAAACTACAAATTATGTATGTTCTAAGAAAGGCAAAGGTATTGGTAAAAAAAGCAAAGGTAAAGAAAATCAAGTAgacaagaaaaaagaaaaggaagTGTTGACTTATTTTGCAACAGACAAGGAAGACATAAATGAGCAGATTGCAGAATATtctaatgaaaaacaatgtGGTATTCCAGAAAAGTGTCCCCTTCTAAAGGAATGTTATGATATAAATGATACAGTGCTTGTCAGATATTTCATAAGAAACAAATGGAAATATTATGTTGGGTTCATAGGAAAAATAACCAAACATGGAGAACATTTTTACTACCTCATTAACTTTTTGAAAACCACAAGACAACAGCAGCATATCACTTTTATTGAACCTAAAAAGAAAGATACTGACGAAATTCCTGAGTCCTTACTAGTAAAGAAAATagaattacaaaagaaaatagatCAAGACAAAGAATATTACTTGATCCATGATGAAGACACTATTTATTTCGACTGa
- Protein Sequence
- MSMVFLSYCLIVAFFVLTKFISFFRVIMPRTYIKKKNKTYTSQDLATAIQKVRNGELTAYAAAQMYKIPMTTLHDHVKTKDTLRQNAGRPTVLPVEDEKKLASTIIVMEKWGFGLSRSEILEIVAEYVRVNNIQTPFKNNTPGPDWFINFRKRHGLSIKKAQPVEYVRRKMTDPFVIAEYFDLLNKTLKDLSLLENPESIWNLDETSLCLDPTKTKVVGKKNKPCARTTYGSGKENITVLAGASASGKKLPPLIIFKGKFVWDQWMADLNKDDYDFELTYAASTKGWMESEIFHNYFEKVLIPSLGEKRPALIIYDGHSTHVDARVVELAVRNNITIIKLPPHTSHLLQPLDISVFKSFKAIWDAKLVEWQRRNVGTKMPKNVFAKTMADTWQQTNPEVIKSGFKKAGIYPFNANVIPIDKYDPDAYQRYKKTLLTHTLNQPKTLKEICIESFNNQFATANETIEITDNNYVALLSEQSRNNAQMLPFEARHPSQVPVCLQNSMPTKSKINIISNIVIKKASQIPLQYPSQLEPSVSFEELPEQSRNDTQILSFEARHPSQVPACLQNSKPTKSKINIISNIVIKKASQVPLQNPSQLDRSVSFEELLLRKIQQDKKNCVPTKKKRVTKGAEVITADLGKKILEEVKETKSKKIATKTSKAHDKRKRKREPSSDTTSISDIISNHSDSDIIDCIDFEDLDDCEDNFNLYQEETSSQKSRKDRKCVINMKTDKNITNEKVLTDKTTNYVCSKKGKGIGKKSKGKENQVDKKKEKEVLTYFATDKEDINEQIAEYSNEKQCGIPEKCPLLKECYDINDTVLVRYFIRNKWKYYVGFIGKITKHGEHFYYLINFLKTTRQQQHITFIEPKKKDTDEIPESLLVKKIELQKKIDQDKEYYLIHDEDTIYFD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01264462; iTF_00785140; iTF_00186102; iTF_01230487; iTF_01230486;
- 90% Identity
- -
- 80% Identity
- -