Slit011188.1
Basic Information
- Insect
- Spodoptera litura
- Gene Symbol
- lolal
- Assembly
- GCA_002706865.1
- Location
- NC:1453796-1482615[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 6.6e-16 2.6e-13 49.3 0.0 1 42 323 365 323 368 0.94
Sequence Information
- Coding Sequence
- ATGTCGCAGCAGTATAGTCTACGGTGGAATAACCACCAGCCGAACTTTATATCTATGTTCACGACCCTATTGAATACTCAAACTCTCGTGGACGTAACTCTCTCGGCTGATGGAAAGCAACTGCTCGCACATAAAGTTGTTTTATCTGCGTGCAGTACTTATTTCCAATCGCTGTTCGTTGACAATCCGTCTCCACATCCGATAGTCATTCTGAAGGATGTGACGTATGCCGACCTGCGCACTATGGTCGACTTTATGTACTGTGGGGAGGTGAACGTCACTGAGGAACAGTTGCCCAAGGTCCTGGACACAGCCaagcttttaaaaataaagggcTTAACGGAGATGCCGGACTCCACGTCACTAACACGGTCCCAGGGCACTTCGGCCGAGTTCCAGAACCAGGGCGACTCCATGGACTCACAGAGGCAATCACCAGCTGCCTCTCCCTCCAACAAGCGCAGACGGCGAAGGAAAAGCTCGAGTGGTTCTACTTCACTAAACGTGGTAGAAAACGAGCAAGGCCGCGCTGACGTCGCCGCTCAGACGGTAGATGCGATCACGTTAAGCAGCGTGCCACAACAACGGCGCATGCGCGAATACCACGAAATTAGAACTATCGACAATTCGCAACAGGTAGACGACACCACGGAACAGGACCTGAATGTTGAGCAGATTGGACTAGAGAACACACCCACAGCGATACCACAAGGAGGCCAATGGACTATGATGGAGCATTCGTATCCGCGGTACACGAACGCGTGCTTAGGGGCGGGCGCGTTGCAGCAGGACCCTGGAATGTACATCAATAATGTGATCAACCCGCACATGGACGGCGACATCAACTACGGCCAGAGCCTCGGCGTGGCCGGACCTTCCCCTGGCCCCTCCTGCGTCGACGTGCAAGCAGCACAGGAACCCAACCCCACGCCCACCCCCAAGCGACGACGAACTACCAACCCTCAATCTGAGGAGAACTTCCAGAGGGCTTTAGAGGCTGTGCGTTTCGGAGGAATAGGATTTTGTAAGGCGGCTCGTATGTTCGGTGTCAACAATAGGACCTTATGGCTCGAGTATAAGAAAAAAGGATACCCGAATAACAGGCCCAGTATTAAGAGCAGGATCAAACGCGAGCACACGACGCCGCCGCCCGAGCACAAGGAGGAGCAACAACTGCCAGAACaacagatggcgctggtgtGCCCGCAGCATCAGGTGCCGCCCGGGTTCATCGAGTCCAACGCCGCGCACGGGTTCCCCTTGCAGGGCGTGGCGCACAACTCTCCTCTCAACATTCTGGGAGTGAATTTCAACTCAATGCAATAG
- Protein Sequence
- MSQQYSLRWNNHQPNFISMFTTLLNTQTLVDVTLSADGKQLLAHKVVLSACSTYFQSLFVDNPSPHPIVILKDVTYADLRTMVDFMYCGEVNVTEEQLPKVLDTAKLLKIKGLTEMPDSTSLTRSQGTSAEFQNQGDSMDSQRQSPAASPSNKRRRRRKSSSGSTSLNVVENEQGRADVAAQTVDAITLSSVPQQRRMREYHEIRTIDNSQQVDDTTEQDLNVEQIGLENTPTAIPQGGQWTMMEHSYPRYTNACLGAGALQQDPGMYINNVINPHMDGDINYGQSLGVAGPSPGPSCVDVQAAQEPNPTPTPKRRRTTNPQSEENFQRALEAVRFGGIGFCKAARMFGVNNRTLWLEYKKKGYPNNRPSIKSRIKREHTTPPPEHKEEQQLPEQQMALVCPQHQVPPGFIESNAAHGFPLQGVAHNSPLNILGVNFNSMQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01361512;
- 90% Identity
- iTF_00072209;
- 80% Identity
- iTF_01361512;