Sfru022908.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Spodoptera frugiperda
Gene Symbol
-
Assembly
GCA_011064685.1
Location
JANIPB010000952.1:128835-138623[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 5.3e-05 0.0061 17.3 0.1 3 23 97 117 96 117 0.97
2 18 4.8e-07 5.5e-05 23.7 1.2 1 23 123 145 123 145 0.99
3 18 3e-06 0.00035 21.2 2.7 1 23 151 173 151 173 0.99
4 18 2.1e-06 0.00024 21.7 2.6 1 23 188 210 188 210 0.98
5 18 4.8e-05 0.0055 17.4 0.6 1 23 225 247 225 247 0.98
6 18 2.8e-05 0.0032 18.2 3.1 1 23 262 284 262 284 0.98
7 18 1.9e-07 2.2e-05 25.0 1.5 1 23 299 321 299 321 0.99
8 18 8.5e-05 0.0097 16.7 2.8 1 23 327 349 327 349 0.98
9 18 6e-06 0.00069 20.3 2.1 1 23 355 377 355 377 0.99
10 18 0.019 2.2 9.2 1.8 1 23 384 406 384 406 0.98
11 18 3.3e-07 3.7e-05 24.3 2.3 1 23 412 434 412 434 0.99
12 18 0.023 2.6 9.0 1.8 1 23 441 463 441 463 0.98
13 18 1.3e-06 0.00015 22.4 1.5 1 23 469 491 469 491 0.99
14 18 0.00025 0.029 15.2 0.7 1 23 498 520 498 520 0.99
15 18 1.5e-06 0.00017 22.2 1.9 1 23 526 548 526 548 0.98
16 18 0.0011 0.12 13.2 0.3 1 20 554 573 554 576 0.93
17 18 1.8e-05 0.002 18.8 1.3 2 23 583 604 582 604 0.96
18 18 1.6e-06 0.00018 22.1 1.3 1 23 610 633 610 633 0.97

Sequence Information

Coding Sequence
ATGTTCGAACAGCAAATCAAAGCTGAACCTATGAGTTTCTACACATCTCATCCACACTACAACAGCAAGTACAACACCAGCAAGATCTCATGGAACAACACCAACAACAACAAGAAATGGCAACAAGATGATGAGTTGAGCTTTAAAGGCATGGACGACGAAGGAGTTGATATGGACATGGACGGACGACAGTGCCCTCAGGGTATGGGGGTGGACATGGGATCAGTTCAAACTAAAATGGAAGTGGCAAATGGGGGTCAATCGACACCGCGATCTAAACCTCAGGCCTGTAAGGTCTGTGGCAAAGTACTGTCGTCTGCTTCATCTTATTATGTTCACATGAAACTACACTCAGGAAACAAACCATTTCAGTGTACTGTATGCGACGCTGCTTTTTGCCGTAAGCCCTACCTAGAAGTGCATATGCGCACACATACAGGAGAGCGCCCCTTCCAGTGTGATCTCTGCCTCAAACGATTCACGCAGAAATCCAGTCTCAACACGCACAAACGTGTTCACACAGatgagcacatgcgcgcgttgatggtgaaggaccggccctacaagtgtgatctctgtcagatgcggttcacgcagagctccagcctcaaccgacacaagaaaatacacacggAGGAACACAGACGCGCGCTGCTGGCTAAGGATCGGCCCTACCAGTGCGGCATCTGCTTTGTGAGATTCACCCAGAAATCAAGTTTGGGCCGGCACGGAAAAATACATACCGAGGAGCACAGACGAGCCCTGTTAGAGAAAGTgcggccgtaccagtgccacatctgttttatgcgcttcactcagaagtccagcctgggacgacatgggaaaatacacactgAGGAGCACATCCAATCGCTGATCAACAAAGTgcgcccctatcaatgcgacatctgtgacaagcggttcactcagaagtccagccttggcactcataaacgtatacacaccggggagcggccgttccagtgcaccgtctgcctcaagtccttcacgcagaagtgcgcgctcaatttgcacgaaaaaatacatacgggcgagcggccctatcagtgcgacgcgtgtctgaagcgcttcacgcagaagtccagcctcaatatacataagaggacgcacacagtccagggcagaccgttccagtgcctgtcgtgccccgccgccttcacctgcaagcaatacctggagatacacacgcgcacgcacaccggcgagcggccctatcagtgcgacatctgcctgaagcgcttcacacagaaatccagtctcaacatccacaagcggacgcactcagtgcagggccggcccttccagtgcctgcagtgccccgccgccttcacctgcaagcagtacctcgagatccacaaccgcacgcacaccggcgagcggccctaccagtgtgacgtatgcctcaagagattcgcgcaaaaatctacactcaatatacacaaacgaacgcacacagtgcaagggcgtccataccaatgcatggagtgcccggcggcgttcacttgcaagccgtacctggagatacacatgcgtactcacacgggggaaaggccgttcgagtgcgatgtctgttacaaacgcttcacgcagaaatccacgctcaacattcacaagcgaattcataccgGTGAACGTCCGTATGCTTGTGATATTTGCCAGAAACGCTTTGCTGTGAAGAGCTATGTAACCGCGCACAGATGGTCGCACGTGGCCGACAAGCCGCTGAACTGCGACCGCTGCTCGATGTCGTTCACGTCGAAGTCCCAGTTCGCCCTGCACATCCGCACGCACTCCACTGGCTCCTGCTACGAGTGCAGTGTCTGCGGCCGCTCCTTTGTGCGCGACAGCTATCTGATAAGACACCACAACCGTGTCCATCGCGAGAATCATAGCAACGTGTCGGCCAACAGCATCGGCACCATCAACAGTGTTGCTACCAACACCAACAACTCTAACAACAGCAACTTTGATTCTCCCGGCGTTTGTGACTTAAGCTTTGTACCAATGACACGAGCAAAATGTCTGCGATGTCGCCACAGTCTATTGCATCTATTTCGTCACCTCCCCCTTCGCATACTCCAACGCCGCAGCCCCCAGATGTCAGGTCAAATGCATCTTGCAGATTGA
Protein Sequence
MFEQQIKAEPMSFYTSHPHYNSKYNTSKISWNNTNNNKKWQQDDELSFKGMDDEGVDMDMDGRQCPQGMGVDMGSVQTKMEVANGGQSTPRSKPQACKVCGKVLSSASSYYVHMKLHSGNKPFQCTVCDAAFCRKPYLEVHMRTHTGERPFQCDLCLKRFTQKSSLNTHKRVHTDEHMRALMVKDRPYKCDLCQMRFTQSSSLNRHKKIHTEEHRRALLAKDRPYQCGICFVRFTQKSSLGRHGKIHTEEHRRALLEKVRPYQCHICFMRFTQKSSLGRHGKIHTEEHIQSLINKVRPYQCDICDKRFTQKSSLGTHKRIHTGERPFQCTVCLKSFTQKCALNLHEKIHTGERPYQCDACLKRFTQKSSLNIHKRTHTVQGRPFQCLSCPAAFTCKQYLEIHTRTHTGERPYQCDICLKRFTQKSSLNIHKRTHSVQGRPFQCLQCPAAFTCKQYLEIHNRTHTGERPYQCDVCLKRFAQKSTLNIHKRTHTVQGRPYQCMECPAAFTCKPYLEIHMRTHTGERPFECDVCYKRFTQKSTLNIHKRIHTGERPYACDICQKRFAVKSYVTAHRWSHVADKPLNCDRCSMSFTSKSQFALHIRTHSTGSCYECSVCGRSFVRDSYLIRHHNRVHRENHSNVSANSIGTINSVATNTNNSNNSNFDSPGVCDLSFVPMTRAKCLRCRHSLLHLFRHLPLRILQRRSPQMSGQMHLAD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00010401;
90% Identity
-
80% Identity
-