Sfru020316.1
Basic Information
- Insect
- Spodoptera frugiperda
- Gene Symbol
- bab1
- Assembly
- GCA_011064685.1
- Location
- JANIPB010000249.1:3211969-3213934[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 7.7e-13 1.4e-09 37.9 0.0 4 42 349 387 346 389 0.91
Sequence Information
- Coding Sequence
- ATGTATCCCGGTTCAACTAATGACGATATTTTGCCAGAATCCCAACTAAGAAAAATGGGGAGCGTCGAAGGACCGCAAACGTTTTGTTTGAAATGGAATCACCACAAGACCAACTTGGTCGAAATCCTAGAAGCTCTCATCAAAGGAGAGACGTATGTGGACTGCACACTAGTGGTCGACGACCAGGTCACCTTCAAGGCCCACCGAGTCGTGCTGGCTGCTAACTCTCCGTACTTTCAGTCCATACTAGCTGATGTTCCGATGGACCACTGCAGCATCCTTTTCCCTGGAGTTAAAGATTACGAGATGCGTGCGCTCCTTGAATACATGTACACGGGAGAGGTAAACGTGGCGCAAACTCATATCCCACACATTATGAAAGTCGCTGAACAGCTGGAAGTAAAGGGTCTCTTCGACATGACTGAACTACGACGGCGGCCCGGCAGCACGGAGCGCACTCCAGCCGCGTCCCCGCCGCGCGTGGTGCCCGCTGCGCCCTCCAGTGTATCTCCGCCCGCACCCGCGCCTCCCTCGCGCTGGCCACCACCACCCGCCGCACCCGTCCTTTCTGCTGCCTACGACTCTGCTGATATGAATCCTCTCAAACGTAAGAAACTATCTAGTATGCTAGCCACACGTGACACTCCAATCTTAAGAAATGTTCTCGCTCAAACCTCTCCGGTAGATTCATCGCAGCCAATGTCACTCGTTTGCCATCCTGTTAGTCAACACGCACCACCTCGCCTGCACTCCAATGGTTCGGCACATGAATCTGAACGCGCTTCGAGTCCTCACCGCGGTTTTGACTACCGCCCTCGTAGACTATCCTCACGTGCTTCATCTCCTCATTACAACAGATCAGACCGGTCAGAAGATGCTCACTCTCCATACACTGAAAGATCCTTTGAAGATGAAAGCCAACGCACGTTCCACCCGTCACCACCACCAACTAATTTCCAACCAGACGTGAGAGCTGGGCTAGCCCCGTACGTTCCACCTCAACAGAAACCCGAATGGAAACGATATAAACAATATACAAGATCGGATATTTTATCAGCAATTGAATGTGTGCGAAACGGGATGAGTGCACTGCAGGCATCACGCAAATATGGCGTGCCCTCGCGTACATTGTACGACAAAGTGAAAAAGCTTGGCATAACAACCAGAGGCGGAGGTGATGATGGCAACCCATCGACGCCTCTGATAGATCCCTCTTTTCTGCAACAAGCGTTAGAAGGGGCTAGAGACGGAGGGCGGGAAGCTCTACACGCGATGGCACTAGCTGCGGCCGCACATGCTGCCCTAGCACCGCGCACGCCCCCTCGGTCACCTCCACACTCGCCACGCTCGCCTGCACAGGACGATGATCATGTTGAAGATTTATCTGTACCTCGTCGTCGCGATATAGACCAGCCGCCTGGTGTTATTGTTCCGCCGCGTAATTTTGCATTAGATTGTGGAAGCGAAAGAGATTGA
- Protein Sequence
- MYPGSTNDDILPESQLRKMGSVEGPQTFCLKWNHHKTNLVEILEALIKGETYVDCTLVVDDQVTFKAHRVVLAANSPYFQSILADVPMDHCSILFPGVKDYEMRALLEYMYTGEVNVAQTHIPHIMKVAEQLEVKGLFDMTELRRRPGSTERTPAASPPRVVPAAPSSVSPPAPAPPSRWPPPPAAPVLSAAYDSADMNPLKRKKLSSMLATRDTPILRNVLAQTSPVDSSQPMSLVCHPVSQHAPPRLHSNGSAHESERASSPHRGFDYRPRRLSSRASSPHYNRSDRSEDAHSPYTERSFEDESQRTFHPSPPPTNFQPDVRAGLAPYVPPQQKPEWKRYKQYTRSDILSAIECVRNGMSALQASRKYGVPSRTLYDKVKKLGITTRGGGDDGNPSTPLIDPSFLQQALEGARDGGREALHAMALAAAAHAALAPRTPPRSPPHSPRSPAQDDDHVEDLSVPRRRDIDQPPGVIVPPRNFALDCGSERD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00025187;
- 90% Identity
- iTF_00709115;
- 80% Identity
- iTF_01362524;