Basic Information

Gene Symbol
bab1
Assembly
GCA_905147225.1
Location
LR990113.1:10731321-10733371[-]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 9.9e-13 4.3e-10 40.1 0.0 4 45 352 393 349 393 0.93

Sequence Information

Coding Sequence
ATGTATCCCGCATCCACTTACGAGGGAATAATTCcagAATCACATCTGCAAAAAATGGCGAATAGCGAAGGACAGCAAACGTTTTGTTTGAAATGGAATCATCACAAAACAAATTTAGTAGAGATTTTAGAGGCACTGATCAAAGGAGAAACTTATGTGGACTGTACATTAGTGGTCGACGATCAGGTGACATTTAAGGCTCACAGAGTCGTCCTAGCCGCTAATTCCCCATACTTTCAGTCTATATTAGCTGATGTACCCATGGACCATTGCAGCATACTGTTCCCCGGTGTTAAAGATTTCGAGATGCGTGCCCTCCTTGAATATATGTACACCGGTGAGGTGAACGTTACTCAGGCTCACATACCACACATCATGAAGGTGGCCGAGCAACTGGAGGTTAAGGGTCTGTTCGACATGACGGAGCTACGACGGCGGCCGGGAAGTACGGAGCGTACATCAGCTGCGTCCCCCCCGCGCGTCGTGCCCGCCGCCCCTTCCAGCGTATCCCCCCCGGTGCCCGCGCCGCCCTCGCGGTGGCCGCCCCCGCCCGCTACACCCGTTCTCTCCGCCGCCTACGACTCCGCTGATATGAACCCGCTCAAACGTAAGAAATTGTCCAGTATGCTCGCCACACGGGATACGCCAATTCTAAGGAACGTTTTAGCTCAGACTTCTCCCGTTGATTCTTCGCAACCTATGTCCTTAGTATGCCACCCAGTCAATCAGAATAATCAACATGGAACACCTCGTTTGCATTCCAACGGATCAGCGCACGAGTCAGAACGTGCCGTAAGTCCTCATCGCGCTTTTGATTATCGTCCTCGTAGACTCTCTTCACGAGCCTCATCGCCACATTATACAAGATCGGACCGCTCTGAAGATGCTCACTCACCATACACTGAAAGATCCTTTGATGATGAAAGCCAACGAACTTTTCACCCATCACCACCGCCTCCAAATTTCCCACAAGATGTTAGATCAGGATTGGCCCCATATGTTCCACCACAGCAAAAGCCTGAATGGAAAAGATATAAACAATATACACGATCAGATATTTTATCAGCTATTGAATGTGTTCGTAACGGAATGAGTGCCCTACAAGCATCTCGCAAGTATGGCGTACCCTCAAGAACGTTATATGATAAAGTAAAAAAACTTGGCATAACGACTAGTAGGCCAATGAGTCGAGGAATAAAAAGGGAAACGAATGGTGCCGCGTTTCCATATGGCTTAAGTGGAGCTGGTGGTGGGGGTGATGATGGAAACCCAGGAACGCCACTTATCGACCCATCATTCCTACAACAAGCATTAGAAGGTGCCACAAGAGACGGTGGCCGAGAAGCACTTCATGCAATGGCGCTCGCTGCAGCCGCCCACGCGGCCCTCACTCCTCGTACACCACCTCGATCTCCACCACAATCGCCTAGAACACCGACGCAAGATGAAGATCACGTTGAAGACCTGTCAGTACCTCGTCGACGTGATTTAGATCAACCGACTGGAGTAATTGTTCCTCCGCGGAACTTTGCATTAGATTGTGGCAGTGAAAGAGATTGA
Protein Sequence
MYPASTYEGIIPESHLQKMANSEGQQTFCLKWNHHKTNLVEILEALIKGETYVDCTLVVDDQVTFKAHRVVLAANSPYFQSILADVPMDHCSILFPGVKDFEMRALLEYMYTGEVNVTQAHIPHIMKVAEQLEVKGLFDMTELRRRPGSTERTSAASPPRVVPAAPSSVSPPVPAPPSRWPPPPATPVLSAAYDSADMNPLKRKKLSSMLATRDTPILRNVLAQTSPVDSSQPMSLVCHPVNQNNQHGTPRLHSNGSAHESERAVSPHRAFDYRPRRLSSRASSPHYTRSDRSEDAHSPYTERSFDDESQRTFHPSPPPPNFPQDVRSGLAPYVPPQQKPEWKRYKQYTRSDILSAIECVRNGMSALQASRKYGVPSRTLYDKVKKLGITTSRPMSRGIKRETNGAAFPYGLSGAGGGGDDGNPGTPLIDPSFLQQALEGATRDGGREALHAMALAAAAHAALTPRTPPRSPPQSPRTPTQDEDHVEDLSVPRRRDLDQPTGVIVPPRNFALDCGSERD*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00025187;
90% Identity
iTF_00709396; iTF_01360547; iTF_00467523; iTF_00823843; iTF_00823173; iTF_01360837; iTF_00441672; iTF_01437224; iTF_01152009; iTF_01197929; iTF_01415753; iTF_00157354; iTF_00468298; iTF_01415754; iTF_00441420; iTF_00821708; iTF_00724077; iTF_00869805; iTF_00908749; iTF_00909005; iTF_01083501; iTF_01083246; iTF_00707121; iTF_00869553; iTF_01197649; iTF_01435985; iTF_00157139; iTF_00468116; iTF_01436948; iTF_00824022; iTF_00761560; iTF_01416984; iTF_00706873; iTF_01502234; iTF_00723899; iTF_01416699; iTF_00822109; iTF_00467358; iTF_01152318; iTF_00404639; iTF_00405151; iTF_00822847; iTF_01416031; iTF_01502015; iTF_00761824; iTF_01416032; iTF_01436256; iTF_01534096; iTF_00120673; iTF_00772161; iTF_01425249; iTF_01534721; iTF_01535073; iTF_00274370; iTF_00274562; iTF_00301346; iTF_01028194; iTF_01532258; iTF_00018307; iTF_00039715; iTF_00040035; iTF_00043715; iTF_00049827; iTF_00446371; iTF_00888419; iTF_01027491; iTF_00171684; iTF_00173220; iTF_00300100; iTF_00447044; iTF_00809316; iTF_00809988; iTF_01085540; iTF_00685605; iTF_01029413; iTF_01062021; iTF_01285701; iTF_01538661; iTF_01092998; iTF_01339078; iTF_01377638; iTF_01440230; iTF_01538662; iTF_01538918; iTF_00300391; iTF_00301095; iTF_00973927; iTF_01025959; iTF_01093959; iTF_01339079; iTF_01538919; iTF_00622120; iTF_00622984; iTF_00809032; iTF_00951720; iTF_01031272; iTF_00017481; iTF_00050089; iTF_00302025; iTF_00447401; iTF_00667689; iTF_00726601; iTF_00951721; iTF_01094825; iTF_01179433; iTF_00041706; iTF_00685354; iTF_00712074; iTF_00726219; iTF_00785931; iTF_00928587; iTF_01062731; iTF_01064811; iTF_01439819; iTF_00302284; iTF_00758412; iTF_01063692; iTF_00072109; iTF_00177325; iTF_00445357; iTF_00786125; iTF_00951981; iTF_01028461; iTF_01073741; iTF_00177038; iTF_00850926; iTF_00951982; iTF_01026478; iTF_01030126; iTF_01338510; iTF_00171983; iTF_00622735; iTF_00810255; iTF_00850927; iTF_00924527; iTF_01340367; iTF_00375472; iTF_00445040; iTF_00446032; iTF_00758064; iTF_00851696; iTF_01338512; iTF_00040721; iTF_00071313; iTF_00711761; iTF_01084177; iTF_00041042; iTF_00147666; iTF_01031058; iTF_01061810; iTF_01030387; iTF_01085075; iTF_01094195; iTF_01180435; iTF_00043412; iTF_00172660; iTF_00928852; iTF_00041941; iTF_00042549; iTF_00042805; iTF_00745557; iTF_00745941; iTF_00831381; iTF_01064565; iTF_01377397; iTF_00017270; iTF_01424982; iTF_01440918; iTF_00018103; iTF_00667287; iTF_00783671; iTF_00973687; iTF_00374360; iTF_00621944; iTF_01095096; iTF_01532952; iTF_00071641; iTF_01027225; iTF_01063897; iTF_00147226; iTF_01533850; iTF_00072219; iTF_00373851; iTF_00783355; iTF_00924923; iTF_01062971; iTF_01093275; iTF_01339963; iTF_00120412; iTF_00771804; iTF_00850556; iTF_01246748; iTF_01441244; iTF_01531900; iTF_00273757; iTF_01073533; iTF_01179613; iTF_01180253; iTF_01285469; iTF_00375102; iTF_00850558; iTF_01029150; iTF_00831103; iTF_00851967; iTF_00888159; iTF_00273536; iTF_01084416; iTF_01247264; iTF_01533216; iTF_00007009; iTF_01251980; iTF_01251670; iTF_00007262; iTF_00432385; iTF_00432053; iTF_00432054; iTF_00432384; iTF_00121602; iTF_00123525; iTF_00121327; iTF_00123283; iTF_01119522; iTF_00111811; iTF_01119242; iTF_01118475; iTF_01118196; iTF_01117499; iTF_00111549; iTF_01117119; iTF_00948035; iTF_00948034; iTF_00947827; iTF_00947828; iTF_01361795; iTF_01491815; iTF_01361516; iTF_01363029; iTF_01492153; iTF_01363258; iTF_00281060; iTF_00282572; iTF_00281526; iTF_00282198; iTF_00636644; iTF_00637836; iTF_00637423; iTF_01166867; iTF_00636212; iTF_01166527; iTF_01487847; iTF_00784322; iTF_01260034; iTF_00327013; iTF_00450309; iTF_01260262; iTF_00327207; iTF_00931145; iTF_00785130; iTF_01173422; iTF_01221742; iTF_01221743; iTF_00889392; iTF_00001105; iTF_00185457; iTF_00186417; iTF_00000242; iTF_00186068; iTF_00931604; iTF_00000470; iTF_00185239; iTF_00889111; iTF_01221431; iTF_01221432; iTF_00932793; iTF_01173209; iTF_00784538; iTF_00785339; iTF_00450044; iTF_01487644; iTF_00001310; iTF_00932352; iTF_00383848; iTF_00906318; iTF_00906039; iTF_00383549; iTF_01076681; iTF_01076325; iTF_01075306; iTF_01075649; iTF_01526218; iTF_01525863; iTF_00433291; iTF_00433067; iTF_00683243; iTF_00683492; iTF_01220779; iTF_01220587; iTF_00037964; iTF_00037708; iTF_00038989; iTF_00038633; iTF_00124429; iTF_00124167; iTF_00036974; iTF_00036555; iTF_00006224; iTF_00006404; iTF_00122288; iTF_00122561; iTF_01282161; iTF_01282498; iTF_01264338; iTF_01264834; iTF_00448947; iTF_00449324; iTF_00237908; iTF_00237391; iTF_00390549; iTF_00390310; iTF_00967958; iTF_00968172; iTF_01401431; iTF_01401206; iTF_01230458; iTF_01230776; iTF_01527482; iTF_01526958; iTF_00364188; iTF_00363951; iTF_01362524; iTF_01362388; iTF_00425597; iTF_00425307; iTF_00794813; iTF_00794275; iTF_01342141; iTF_01342353; iTF_01332958; iTF_01332475; iTF_01426047; iTF_01425869; iTF_00122560; iTF_00122287; iTF_00677472; iTF_00677803; iTF_00906976; iTF_00907183; iTF_00908064; iTF_00907803; iTF_00926528; iTF_00926761; iTF_01192864; iTF_01192561;
80% Identity
iTF_00709396;