Sexi018469.1
Basic Information
- Insect
- Spodoptera exigua
- Gene Symbol
- -
- Assembly
- GCA_011316535.1
- Location
- CM022075.1:13020970-13021320[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.2 2.8e+03 -1.5 0.1 35 44 3 12 2 12 0.84 2 2 8.9e-10 3.5e-07 30.2 0.0 3 39 16 53 14 56 0.91
Sequence Information
- Coding Sequence
- ATGCCACGACGTTACCAAAGGAAGACTGAGACCAAATACAAATTAGAAGATTTAGAAAAAGCCGTTCACGGTGTAAGGAACAAAATACTGTCGTTAGGAAAGGCATCTATTATTTATTCTGTTACAAAAAGTACTATACATGACTATCtcaagaaagaaataataaatgaaccTAAAACTGGAAGAAAAGCTATATTTACTGATGCACAAGAAACTGAATTAGAACAACGTATAATTAAATGCAGCAAAGTATTTTATGGCTTAACAATAGAAATGGTGCGAAAAATGTACCACGCAAAAAGAAGAAAGTCGATAAAGGAGCTACGACGGAGAAAGAGTATTATTGTCTGA
- Protein Sequence
- MPRRYQRKTETKYKLEDLEKAVHGVRNKILSLGKASIIYSVTKSTIHDYLKKEIINEPKTGRKAIFTDAQETELEQRIIKCSKVFYGLTIEMVRKMYHAKRRKSIKELRRRKSIIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01361518;
- 90% Identity
- iTF_00041707;
- 80% Identity
- -