Basic Information

Insect: Spilosoma lubricipeda
Gene Symbol: -
Assembly: GCA_905220595.1
Location: HG992303.1:2231329-2238201[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 9.7 9.6e+02 1.6 0.5 3 10 223 230 222 234 0.89

2 14 3.1 3e+02 3.1 3.6 3 23 245 268 243 268 0.81

3 14 0.021 2.1 9.9 0.5 3 23 286 307 285 307 0.95

4 14 0.01 1 10.9 2.0 2 21 345 364 344 365 0.94

5 14 0.65 64 5.3 3.2 1 23 653 675 653 675 0.91

6 14 0.0011 0.11 14.0 0.4 3 23 682 702 680 702 0.96

7 14 6.8 6.6e+02 2.1 0.3 1 10 724 733 724 745 0.70

8 14 0.0022 0.22 13.0 1.6 3 23 792 812 792 812 0.97

9 14 2.5e-05 0.0025 19.1 0.4 2 23 828 849 827 849 0.96

10 14 1.6e-07 1.5e-05 26.1 0.9 2 23 856 877 855 877 0.97

11 14 0.00022 0.022 16.2 0.9 1 23 882 904 882 904 0.97

12 14 0.0051 0.5 11.9 0.5 2 23 911 933 910 933 0.94

13 14 0.16 15 7.2 0.4 1 19 940 958 940 959 0.87

14 14 0.00062 0.061 14.8 0.4 3 23 972 993 970 993 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	9.7	9.6e+02	1.6	0.5	3	10	223	230	222	234	0.89
2	14	3.1	3e+02	3.1	3.6	3	23	245	268	243	268	0.81
3	14	0.021	2.1	9.9	0.5	3	23	286	307	285	307	0.95
4	14	0.01	1	10.9	2.0	2	21	345	364	344	365	0.94
5	14	0.65	64	5.3	3.2	1	23	653	675	653	675	0.91
6	14	0.0011	0.11	14.0	0.4	3	23	682	702	680	702	0.96
7	14	6.8	6.6e+02	2.1	0.3	1	10	724	733	724	745	0.70
8	14	0.0022	0.22	13.0	1.6	3	23	792	812	792	812	0.97
9	14	2.5e-05	0.0025	19.1	0.4	2	23	828	849	827	849	0.96
10	14	1.6e-07	1.5e-05	26.1	0.9	2	23	856	877	855	877	0.97
11	14	0.00022	0.022	16.2	0.9	1	23	882	904	882	904	0.97
12	14	0.0051	0.5	11.9	0.5	2	23	911	933	910	933	0.94
13	14	0.16	15	7.2	0.4	1	19	940	958	940	959	0.87
14	14	0.00062	0.061	14.8	0.4	3	23	972	993	970	993	0.96

Sequence Information

Coding Sequence: ATGCCAAAACCATACGACGACTATGAAGAACTTATTGATTCAAATAAGAAGCCAAAAGAATTTAAACCGCCAGAATTCTCCGTCACCGTAGCAGTTGAAGAGTTTGACGAGGACAGTTCAGATCTAGTTATCGTAGAAACTAATGAGCAGGCTCCCATTGAAGTAATTTCTTCAGATTCCGAAGTAGATGACACTATTGGGGAAAAAGACACCAAAAGCAAACTGTCCGAAAATGAAATTGAATCTTCAGAAACATTACAAGGTGAAATAGTTTTAGATAGATATGCAATACTTGATGCTACAAACGAAATACTGGAAAATCCAGAGAATATAGCTGATAAAATGCTCGGTATAGAAGTTAGAAACTGTATCGGACAATATCGGACAAGTTTTGTGGATAAATTCGAAGCTAAAATGCAAAGTGTCTTCCGTAAATGGTTTAAATGGCAGAAATCAATCAGAACAAAGTTCAGAAGTTCGCCTCTATTCTacaaatgttatatttgtaGGAAATCTTGGTGGTATTATCACGATTTTCGAGAACATTTGAAGGGACATGATGGTTTTAAACTCGATTTAGAAGAATACACTGTGCATGAAGCTAATATCGTTGCTTATTGTAGTGGTGATAATATTAACAAAGAGGATTTTGATACTGAAGGCGATTGTCCGAAGTGCGGGTACGATTTTGAGGCTCACAAATCGTCCACAAGAATAGATTCCACATACATTTGTAAAATAGACTGTTGCAAACGAATATTTTACACGTGTTCAGGTTTGAAGACACATGAATACGTGTTTCACGCTGCCTCAAATTTAAGCGGTGATTTGCTAGAAGATGGAAAACAAAAGTTCTGTGAAGCATGCAGTTTGGTATTTAATTCACAACAGTCATATCAATCTCATATGAATTTGATGCACATGGTTCGTTCAGATTTGGTTGTTCCGTTCAGTTTAAAGAAGTGTCTACTGTGTAATGGAAAATTGTTATTAGGTGTGTACCATGTTTGTACGGAGAAGAAGATTAAGATACGCTGTACAATGTGTTACAAAAGTTTTCAAAGGTATTGTCAGTATAAAGCCCATATGGCTAGCCAAAATGGACGCTGCAAGTGCCGGATTTGTGATGAAGAATTGCCAAAACGGTGTTTGGAAGCGGAACACCTAATGAAACATACGGATAAATTTGTGATTGTGAAGAAATGCTTGATATGTAAGGAGTTTACTGTGTTCTTAGATTATCAGACTGCATTTGACCATGTGTCTGTGCATTTGAAAATGCGGTATGAAGGAAGCAATTACAAGTATATAAGTAAAattttgATCCCAAAATCTTGTCTACAGCATGTGGAACCAAAAATGGAAATCAAAGAAGAACCGAATGATATCATCATAGCTCCCGAATTGAATATGAAACAAGATAGTGATGATTTTGAATCTGACACTGGTGATGAGACCAAAGTACAAATCAAAGACGAAATAGATATTCAAGAAGATTTCGAATCGGCACACTTGAAACAAGAAGTAGAGCAAAAAGCGGAAACAACATCTGATATTTccaaaatattcggtataaaaatTGAAGCAAATGATATGAAGCAAGAACTGCAAGAGGACGAAGAATCTGAATATGAAGACGATATAATAAAACTAGACTTCAATTTCTTGAATACAATGCAAGAAGCCGTTGAATATTCAACGCAAGATTGTATAATAAAAGTAGAAGGGAATACAGAGGGAACGCAAGAAGCCACAGACGAAATGCAAGTAGACGAGGATACGCAAGACTATGAAGAATATCAAGATACTGATGATATTCTTGGTGGAAATGTGAATGGCAAACGGAGAAGACCTAAAATTTATCAGTGCCGCCGATGTGGGTTTAACGCTACTCATAGAGAGTTCAGAAATCATTTGAGTTCGCATTGCACTGAAAAAGTACACGAAACAAAAGCTTATAAATGTACAAAATGCTCGATCAAATTTGACCAATTTAATAAGTTTGTGGACCATTTTACTGAGCATAATCTCAGTCCGTTAGCATGTCCcgaatgttttaaatgtttcaaaTCATATGAAGCGATAGAAATTCATATAGAGAAACATATTAGAATGACTTATGTGGCAGTTCACACTGCTTCAGGGTCTAAGAAGAAAATgaatttctattacaaatgtAAGATTTGCGAGGCATCCATTGAGAAGGTTGATTTCTTTCAGCATTGGGTTGGGCATTTGACGTTTATTGAGAAGGCTGGAGATGTTCCAAAAGATGCTGATGTGTTGGACAGTAGTAGAATTAATCAAGAAATGCTAAGTGAATTGCTGAagcGCTTGCAGTCTCCACTCGCAGTTTTCAATTTGAGAAGAGGCTGCCCTATATGTGTCAGACATTTTGAAAGAAAAAGGGATTACAAAAGACATTTAATCGAACATCTTCTAATCCACGCATATTCAAtgcattatttatataaaaacttaaattgtCAAATTTGTGGCCAAGGTTTCTATAAACCAGATGATTATAAGAAGCATATGCGTGATCATGGCGATTTGCGCGATATCAAATGTGAGATTTGCGATAAGTTTTTCAGCGACTCCAGTAATTATACTAAGCATATAAAAGTTCATAATAAGAATGCGTATacgtgtgatatatgtaagaagaAATTTCAAGCGAAATTTTCGTTGGAAAAGCATATTGTGATTCACGACAATCAGAAACCAATAGTCTGTATGCAATGCAATAAGAGGTTCTATATAGAGTCTACTTATAAGAAACATATCAAAGCAGTTCACTCTAAGGACGGGCAGAGCTACGCCTGTAACATATGTAAACAACGATTTAGAAAGTTAAAAGATAAGTGGGACCACTTATGGTACGTCCATAGAGAACGGAATAAGAAAATTGACTGTCCAAAATGTTCCGACTCATTCAGAAAGTTCAGCGATTTGAAGATCCATATGAAAGTTGATCATTTGATTCATATAACGAACGCTAAGATGTTTCAGAAACAAAGGAAAACGAATAATTTTCTAACACTGTGTTGA
Protein Sequence: MPKPYDDYEELIDSNKKPKEFKPPEFSVTVAVEEFDEDSSDLVIVETNEQAPIEVISSDSEVDDTIGEKDTKSKLSENEIESSETLQGEIVLDRYAILDATNEILENPENIADKMLGIEVRNCIGQYRTSFVDKFEAKMQSVFRKWFKWQKSIRTKFRSSPLFYKCYICRKSWWYYHDFREHLKGHDGFKLDLEEYTVHEANIVAYCSGDNINKEDFDTEGDCPKCGYDFEAHKSSTRIDSTYICKIDCCKRIFYTCSGLKTHEYVFHAASNLSGDLLEDGKQKFCEACSLVFNSQQSYQSHMNLMHMVRSDLVVPFSLKKCLLCNGKLLLGVYHVCTEKKIKIRCTMCYKSFQRYCQYKAHMASQNGRCKCRICDEELPKRCLEAEHLMKHTDKFVIVKKCLICKEFTVFLDYQTAFDHVSVHLKMRYEGSNYKYISKILIPKSCLQHVEPKMEIKEEPNDIIIAPELNMKQDSDDFESDTGDETKVQIKDEIDIQEDFESAHLKQEVEQKAETTSDISKIFGIKIEANDMKQELQEDEESEYEDDIIKLDFNFLNTMQEAVEYSTQDCIIKVEGNTEGTQEATDEMQVDEDTQDYEEYQDTDDILGGNVNGKRRRPKIYQCRRCGFNATHREFRNHLSSHCTEKVHETKAYKCTKCSIKFDQFNKFVDHFTEHNLSPLACPECFKCFKSYEAIEIHIEKHIRMTYVAVHTASGSKKKMNFYYKCKICEASIEKVDFFQHWVGHLTFIEKAGDVPKDADVLDSSRINQEMLSELLKRLQSPLAVFNLRRGCPICVRHFERKRDYKRHLIEHLLIHAYSMHYLYKNLNCQICGQGFYKPDDYKKHMRDHGDLRDIKCEICDKFFSDSSNYTKHIKVHNKNAYTCDICKKKFQAKFSLEKHIVIHDNQKPIVCMQCNKRFYIESTYKKHIKAVHSKDGQSYACNICKQRFRKLKDKWDHLWYVHRERNKKIDCPKCSDSFRKFSDLKIHMKVDHLIHITNAKMFQKQRKTNNFLTLC*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00441940;
90% Identity: -
80% Identity: -