Dmen009843.1
Basic Information
- Insect
- Diaphora mendica
- Gene Symbol
- -
- Assembly
- GCA_949125395.1
- Location
- OX421313.1:2531454-2540625[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 9.2 1.2e+03 1.7 1.7 1 23 175 197 175 197 0.79 2 16 6.7 9.1e+02 2.1 0.5 3 11 234 242 233 245 0.87 3 16 0.47 63 5.7 2.3 1 23 254 279 254 279 0.92 4 16 0.058 7.8 8.6 0.7 3 23 297 318 295 318 0.94 5 16 0.046 6.2 8.9 0.2 2 20 356 374 355 376 0.95 6 16 6.4 8.7e+02 2.2 3.8 2 23 382 403 381 403 0.91 7 16 0.28 38 6.4 3.1 1 23 635 656 635 656 0.98 8 16 1.1 1.4e+02 4.6 2.4 1 23 667 689 667 689 0.91 9 16 0.27 36 6.5 0.1 2 23 695 716 694 716 0.96 10 16 0.0045 0.61 12.1 1.5 3 23 806 826 806 826 0.95 11 16 6.1e-06 0.00082 21.1 1.2 2 23 842 863 841 863 0.97 12 16 1.6e-07 2.1e-05 26.1 0.9 2 23 870 891 869 891 0.97 13 16 0.00018 0.025 16.5 1.3 1 23 896 918 896 918 0.98 14 16 0.46 61 5.8 0.2 6 23 929 947 925 947 0.91 15 16 0.17 23 7.1 0.6 1 19 954 972 954 973 0.87 16 16 4.7e-05 0.0064 18.3 0.8 3 23 986 1007 984 1007 0.95
Sequence Information
- Coding Sequence
- ATGCCAAAACCACCACAAACATACGCCAACTTTGAAACTCGTAAGAAAACTCGTATATTTATTGACTCACAGAAGAAACCAAAAGAAGTTAAGTCGCCAGAATTAAAATTCTCCGTCACCGTAGCAGTTGAAGAGTATGATGAGGATAGCTCAGATCTAATTATCGTAGAAACTAATGAACAGGCACCCATCGAAGTAATTTCTTCAGATTCCGAAGTAGATGACACGATTAGAGAAAAAGACCTCAAAAGCAAACAGTCTGAGAATGACATTGAATCTCCTGAAATGCTACAGGGTGAAGTGGTTTTAGATAGATGTgcaatacttaatgctacaagcGAAATACTGGAAAATCCAGAGAATATAGCTGATAAAATACTCGGTATTGAAGTCAGAAACTGTATTGGACAATATCGGACAAGTTTTGTGGATAAATTCGAAGCTAAAATTCAACGTGTCTTCCATAAATGGTTTAGATGGCAGATCTCAATCAGAGCAAAGTTCAGAAGTTCGCCTTTATTCTACAAATGTTATATTTGTAGGAAATCTTGGTGGTATTTTTACGATTTTCGAGAACACTTGAAAGGGCATGATAGTTTTGAACTCGATTTAGAAGAATACACGGTGCATGAAGCGAATATCGTCGCTTATTTTagaggtgataaaattaaggAAGCGGATTTTGATACTGAAGGTGATTGTCCGAAATGCGGTTACGATTTTAACGCTCACAAATCGTCTACAAGATTAGATTACACATACATTTGTAAAGCAGACAGTTGCAATCGAATATTTTACACGTGTTTCGGTTTGAAAACACATGAATACATGTCCCACATTGCCTCAAATTTAAGCGATGATTCAGTAGAAGATGGAAAAGAATTGTTTTGCGAAGCATGCAGTTTCATCTTTAATTCACAACAGTCGTATCAATCTCATATGAATTTGATGCACACGGTTCGTTCAGATTTGGTTGTTCCTTTGTATTTGAAGAAGTGTCTTTTGTGTAATGAAAAATTTTTATTAGGTGTGTACCATGTATGTGCGGAGAAGAAGATTAAGGTACGGTGTACATCGTGCTACAGAAGTTTTCAAAGGTATCCTCAGTATAAGGCCCATATGGCTGGCCAAAATGGACTGTGCAAGTGCCGGATTTGTGATGAAGTGTTGTCAAGAAGGTGTCTGGAAACGGAACACCTGATGAAACATACAGATAAATTTGTGTTTGTGAAGAAATGCTTGATATGTAAGGATTTTACTGTGTTTTTAGATTATCAGACTGCTTTTGACCATGTGTCTGTGCATTTGAAAATGCGGTATGAAGGGAGCAACTTCAAGTATATCAGTAAAattttgaTCCCAAAATCGTGTCTACTAAAGCGTTTGGATACAAACATGGAAATCAAAGAGGAACCGAATGATGTCCTCATAGCTCCCGAATTGAAAATGGAACAAGATAGTGATGATTTTGAATCTGACGCTGGTGATGAAACTAAAGTACAAATCAAAGAAGAAATAGATATTCAAGAAGACTTCGAATCGGCGTACTTGAAACAAGAGCTAGAGCAAAAAGCAGAAACAGCATCTGATATTTCCAGAATATTCGGCATTAAAATCGAAGCAAACGATATGAAGCAAGACACGCAAGTAGATGAAGAATCAGAATACGAAGACGATATAATAAAACTAGACTTCAATTTCTTAAATACAATGCAAGAATCCGTTGAATATTCAACACAAGATTGTATAATAAAAGTAGAAGAGAATACAGAGGGAACGCAAGAAGCTACTGACGAAATGCAAGAAGACGAAGATACGCAAGACGATGAAGAATATCaagatgatgaagatgataGTTTTGAAGAAAACGAGAATTACAAACGAAAGAAAGGACCTAAAATGTATGAGTGCCGTCAATGTGGGTTTAACTCTACTCACAGAGAATTCAGAGCTCATATGAATTCGCATTGCACTGAAAAAGTTTTTGAAACGAAAGTTTATACATGTACGAAATGCTCGATCAATTTTGACCAATTTAATAAGTTTGTAGATCATTTTACTGAGCATAATCTCAGTCCGTTAACATGTCCCGAATGTTTTAAACCCTTGGAATCGTATAAAGCCATAGAAATGCATATTGAAAAACATATACGAATGACCTATGTGGGAGTTCGAACTGCCTCAGGGTGTAAGAAgaatgtaaaattatattacaaatgtAAGCTTTGCGAGGTGAACATTGAGAAGGTGGATTTCTTTCAGCATTGGGTTGGGCATTTGACGTTCATTGAGAAAGCAGAAGATGTTACAGAAAAATCTGATGCGTTAGACAGTAAACGAATTAATCAGGAAATGCTAAGTGAATTGTTAAaGCGCTTGCAATCTCCGCTCCCAGTATTGAATTTGAGAAGAGGCTGTCCCATCTGTGTCAGACATTTTGAACGAAAACGGGATTACAAAAGACATTTAGTGGAACATCTTCTAAGCCATGCTTATTCACagcattatttatataaaagcctTAAGTGTCAAATATGTGAAGAAAGTTTCTACAGATCAGATGATTATAAAAAACATATGCGCGATCATGGAGATTTGCGCGATATCAAATGTGAAATTTGCGATAAGTTTTTCAGCGATTCAAGTAATTATACGAAACACATAAAAGTGCATAATAAGAATGCGTATACGTGTGACATATGTAAAAAGAAATTCCAAGCGAAATTTTCGCTGGAAAAGCATATTTTACTTCACAACGATCAGAAACCAATAATATGTGTGCCATGCAACAAGACATTTTTCATAGTGTCTACTTATAAGAAACATATCAAAGCGGTTCATTCGAAAGACGGGCAGACGTATGCCTGCAAAATATGTAAACAACGGTTCAGGAAGTTAAAAGATAAGTGGGATCATTTATGGTACGTCCATAAAGAACGGAGTAAGCAGATTGATTGTCCAAAATGTTTCAAATCGTACAGAAAGTTCAGCGATTTGAAGGTCCATATGAGAGACGATCATTCGATGCATATAACGAATGCTAAGGTGAGTTATAATCTTAAATAA
- Protein Sequence
- MPKPPQTYANFETRKKTRIFIDSQKKPKEVKSPELKFSVTVAVEEYDEDSSDLIIVETNEQAPIEVISSDSEVDDTIREKDLKSKQSENDIESPEMLQGEVVLDRCAILNATSEILENPENIADKILGIEVRNCIGQYRTSFVDKFEAKIQRVFHKWFRWQISIRAKFRSSPLFYKCYICRKSWWYFYDFREHLKGHDSFELDLEEYTVHEANIVAYFRGDKIKEADFDTEGDCPKCGYDFNAHKSSTRLDYTYICKADSCNRIFYTCFGLKTHEYMSHIASNLSDDSVEDGKELFCEACSFIFNSQQSYQSHMNLMHTVRSDLVVPLYLKKCLLCNEKFLLGVYHVCAEKKIKVRCTSCYRSFQRYPQYKAHMAGQNGLCKCRICDEVLSRRCLETEHLMKHTDKFVFVKKCLICKDFTVFLDYQTAFDHVSVHLKMRYEGSNFKYISKILIPKSCLLKRLDTNMEIKEEPNDVLIAPELKMEQDSDDFESDAGDETKVQIKEEIDIQEDFESAYLKQELEQKAETASDISRIFGIKIEANDMKQDTQVDEESEYEDDIIKLDFNFLNTMQESVEYSTQDCIIKVEENTEGTQEATDEMQEDEDTQDDEEYQDDEDDSFEENENYKRKKGPKMYECRQCGFNSTHREFRAHMNSHCTEKVFETKVYTCTKCSINFDQFNKFVDHFTEHNLSPLTCPECFKPLESYKAIEMHIEKHIRMTYVGVRTASGCKKNVKLYYKCKLCEVNIEKVDFFQHWVGHLTFIEKAEDVTEKSDALDSKRINQEMLSELLKRLQSPLPVLNLRRGCPICVRHFERKRDYKRHLVEHLLSHAYSQHYLYKSLKCQICEESFYRSDDYKKHMRDHGDLRDIKCEICDKFFSDSSNYTKHIKVHNKNAYTCDICKKKFQAKFSLEKHILLHNDQKPIICVPCNKTFFIVSTYKKHIKAVHSKDGQTYACKICKQRFRKLKDKWDHLWYVHKERSKQIDCPKCFKSYRKFSDLKVHMRDDHSMHITNAKVSYNLK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01361086;
- 90% Identity
- -
- 80% Identity
- -