Slub026611.1
Basic Information
- Insect
- Spilosoma lubricipeda
- Gene Symbol
- -
- Assembly
- GCA_905220595.1
- Location
- HG992296.1:7901785-7917437[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.001 0.098 14.1 1.7 2 23 270 291 269 291 0.96 2 12 0.023 2.3 9.8 3.6 1 23 299 322 299 322 0.93 3 12 0.001 0.099 14.1 3.3 1 23 424 446 424 446 0.99 4 12 0.00096 0.095 14.2 1.9 1 23 454 477 454 477 0.97 5 12 0.038 3.8 9.1 2.5 1 23 481 503 481 503 0.98 6 12 0.00039 0.038 15.4 2.2 1 23 508 531 508 531 0.97 7 12 0.4 39 5.9 2.8 3 23 537 558 536 558 0.90 8 12 0.27 27 6.5 0.0 2 20 578 596 577 598 0.93 9 12 2.4 2.4e+02 3.5 0.1 2 23 645 667 644 667 0.93 10 12 5.1e-06 0.0005 21.3 1.1 1 23 676 698 676 698 0.98 11 12 0.00011 0.011 17.1 0.9 1 23 704 726 704 726 0.97 12 12 0.00082 0.08 14.4 4.9 1 23 732 755 732 755 0.98
Sequence Information
- Coding Sequence
- atgtatgacCTTAAAGCGTGCATTGCGTGTCTTAGTATTGACACAAAATTATACAATATGGACAGTGGACAGTTGAGAAACGAGTTCCATTTAATTACAGGACTACAGaCCAGTACAGGCAGTGGTATGCCagattatttatgttttcaatgCTCAGCATATTTAAAGAGTTGCATAAAGTTTCGGGACAGATGTCAACGGGCCCATTACGCCTTACTACAAATACTTAACATTAACAAAGAGataaagaaaacaaatttaacGGATTTCAACCGCTCTTTATTTGATATTATGCCACCTCTATCACTCATGAGCTTGGAGAAAGCTCATTATGAACAGACTAAGTTTCAATGGACACAACACAACCGACTGTCATATTCTAGTACTTTGAGACTGAATGCAACACCGATACTTCACTGTAGTACATTAACATCAGAGGATACTTTTAGTGCAGTAACTAACGTCCCAATAGAGATAGAATTCACAAATGCCAAAATTAAAGATGACATTGAAGAGATAGCTCAGAATGTTGTAAATTCTGATGTTGAAGCAGTTAACGAGGATTATGTAGGTGAGACATCCTCTAATGTTGAATTAGCTGATGCATTTATGGATAATGATGACCCATTTGTCAGTGATGCTGAATCAGAATCATTAGAACCTAACAATATTTGTAAGAATGAAAAAACGGATGGTGACGTTGATGGTTCAAATTTGGATGAAGAGTATGCTATGATGATACCCATATCGGTGAAAGAAGCCAAAGCTGTGGTTGAGGTGTATAAATTGTTCAGTCATGGGAAATTACACTGTAAAGTATGTAATAAACCATATTACAGTGAGATCAGGCTAAAGGAACACATGAGGATGCATGAAAAGCACCTAAGTGGCACATTTCACTGTGAACTGTGTAACTATTTCTACAAAtctgattatttgttaaaaacacACATGACTGCTAAacatatgtataagtatgtctGTAGGAAATGTCCTGATGTTAATTATGATAGGACCTCTGCCAAACAACACTATATATGGGCTCATTTACCAAAAGGATGCAGGAAAGAAGCGAACTGGTATGAATCACGACCCTCGTGGCTAAGCAACAAAGGTGGTTTAAGAAAAAAAGGTGTTGTCACTATGAAACCTGTCAGGAAACTAACGAAATTGCCTAAAGACTTCTTAGTATGCGCCACCATACAACACGAAGAACAGTATGCTATTGTGCGAGAGAGACAGGACTCCAGGAACTATAGAGAAgccaaatttaaatgtaatatgtgCTATAGAGGCTTTAGGGAAATGGAGACATACAGCAAGCACATGAGGAAACACAGTTCGGAACATTCCGGTCGATACGAATGTGATGTGTGCAAGCTCCACTTCAGGGACCAGCGCAAAATATACAAGCACATGAACATAGCTCACCTGTTCAAGTACACGTGTCAGATGTGCACATATGTTTGCTATAGTAGTGGTCAAGCACAAATGCATTATCGGTGGCATAAGAATGTCAAATATCCATGTCCTCATTGTAAAATGGAATTttcgAAATCCTCAACGCGTCTCACTCACATCAGAATAAAGCATCCATCTACAAATCTCTGTAATCTGTGTGGGCACAGCTTCGTCAGTAAAACGGGACTTTACTGCCACAAAAACATCGCACACACTAAAGAGGAGAGAGAGTTGAGCACCACGTTGAGTGTGAACGAGTCGGACCCGACGTACTGCGCCGACTGCAACGTTCAGTTCGTGAGCGAGGCCGCCTTCAACACGCACCTCGGGAGTTCCAACAAACACGCGTCCACTAACCTGTCGACGAAGCCGAACCGTCGCAGGAAGAGCGAGGAAGTGCACAAGCCGCGCGGCCGACCGAGTCGAGGCAATCGGCCCGAGATCGTCAACAATGGCGTCACCACACCAACCACCTGCGAAGTGTGTAACGTGGTACTCGCCAACGACGTGCAAGCTCGCAAGCACTATGAGTCAGAACACCCCGACACGGAGTTCCTCAAACGGTACATGTGTGACGTGTGTGGACACACCACGAGGCAATACGCGAACCTTTTAGTACACATGCGAACTCACACCGACGAGAAGCCCTACGAGTGTCCGCACTGCGACCGACGGTTCAACATGCCGAGCAACAGGGACAGACATCTTGTCGTGCACACGGGTGAGAAGAGATACGAGTGTCAACATTGTAACCGTCGGTTTTCGCAAAGCAGCGCTTGCAAACTTCACATACAAACTGTTCATTTCAAGATACCTTACGCACCTTGGAACAAGAAGAACCGCAAACGACGCAAGGAGATGGAGAATGCAAATTTAGCGGCCACGTCCAATCTCCAGACACAGCACAAGCTCACGTTCGACACTCAGAGCGATTATCTCAACGCTTATATCACCTACAATGACGAATAA
- Protein Sequence
- MYDLKACIACLSIDTKLYNMDSGQLRNEFHLITGLQTSTGSGMPDYLCFQCSAYLKSCIKFRDRCQRAHYALLQILNINKEIKKTNLTDFNRSLFDIMPPLSLMSLEKAHYEQTKFQWTQHNRLSYSSTLRLNATPILHCSTLTSEDTFSAVTNVPIEIEFTNAKIKDDIEEIAQNVVNSDVEAVNEDYVGETSSNVELADAFMDNDDPFVSDAESESLEPNNICKNEKTDGDVDGSNLDEEYAMMIPISVKEAKAVVEVYKLFSHGKLHCKVCNKPYYSEIRLKEHMRMHEKHLSGTFHCELCNYFYKSDYLLKTHMTAKHMYKYVCRKCPDVNYDRTSAKQHYIWAHLPKGCRKEANWYESRPSWLSNKGGLRKKGVVTMKPVRKLTKLPKDFLVCATIQHEEQYAIVRERQDSRNYREAKFKCNMCYRGFREMETYSKHMRKHSSEHSGRYECDVCKLHFRDQRKIYKHMNIAHLFKYTCQMCTYVCYSSGQAQMHYRWHKNVKYPCPHCKMEFSKSSTRLTHIRIKHPSTNLCNLCGHSFVSKTGLYCHKNIAHTKEERELSTTLSVNESDPTYCADCNVQFVSEAAFNTHLGSSNKHASTNLSTKPNRRRKSEEVHKPRGRPSRGNRPEIVNNGVTTPTTCEVCNVVLANDVQARKHYESEHPDTEFLKRYMCDVCGHTTRQYANLLVHMRTHTDEKPYECPHCDRRFNMPSNRDRHLVVHTGEKRYECQHCNRRFSQSSACKLHIQTVHFKIPYAPWNKKNRKRRKEMENANLAATSNLQTQHKLTFDTQSDYLNAYITYNDE*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00824173;
- 90% Identity
- iTF_00441880;
- 80% Identity
- -