Slub032438.1
Basic Information
- Insect
- Spilosoma lubricipeda
- Gene Symbol
- -
- Assembly
- GCA_905220595.1
- Location
- HG992303.1:5576253-5586684[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0022 0.22 13.0 1.3 1 23 159 182 159 182 0.97 2 10 0.0036 0.35 12.4 2.1 1 23 189 211 189 211 0.98 3 10 0.002 0.2 13.2 0.4 2 23 247 269 246 269 0.94 4 10 3.5e-05 0.0034 18.7 1.5 2 23 272 293 271 293 0.96 5 10 9.9e-06 0.00097 20.4 0.4 1 23 299 321 299 321 0.95 6 10 0.28 28 6.4 1.1 2 21 331 350 330 355 0.93 7 10 4.1e-05 0.004 18.5 2.0 1 23 360 383 360 383 0.94 8 10 0.00072 0.071 14.6 3.0 1 23 389 411 389 412 0.95 9 10 0.00048 0.047 15.1 2.3 1 23 420 442 420 442 0.96 10 10 0.00098 0.096 14.1 0.1 1 23 448 471 448 471 0.95
Sequence Information
- Coding Sequence
- ATGGAAAATAATATCGTTAAAGAAGAAGAAGCAGATACAGTAGAACCAGCAGAAGTCAATgcagaaattacagaaacagCAGAGAATACTTCACATATCTATGTTGACAGTACAAGTGATAAAGAAGAATTATATAATGATTGTAAAGCAAATGATAAAATGATAGTtgcaaataatgaaataataaaagcaaatgaTGAAACAGTAGAAACAAGTTATGAAACCATAGAAGCAAATGATGAAACAATAGAAACAAATGATGAAAACACATTAGAAATTAATCAAACAGATGCAGAAATGGATGAAATGGACTTAAATCATAAATCTAGTTTTGTAAAGAGaagaaatgtagttaaaagacCTAAAATTGACGCAGAACTTGAGAAAAAGTTCACAAAAGTAGAGTTGAGTGCAGAAGAAATTATACAACACAGAGAAAATAAGAGAAACCATTACAATTTTAAGAAGATACCGTTCAAATGTGACTCTTGTGTGCTTGGTTTTACCAAAAAAGAGACTTTAGATAAACACATGGAAAAGAAACATGACgagAGCATAGGTACACATAAATGCGATATTTGTAAAGTGCGTTTCTCATCGAAGTTGTTGGTGGCGAACCACAGGATGCGTCACTACTACTGCTACAGATGTACGCTGTGCAAGTACGAGACCTCTGAGCTGTGGTCCGCGCTCAACCATTGCAAGATGAAACACGAACGAGACCGCCTTAACAGCATACATTGTACACAGTGTGAAACAGTCGTTAAAACAGCTAAAGAGTTAGAAGAACACATGCAGTTGGAACATAGACTCTATTGTAATGAGTGTGGCGTCAGGTTCAAAGGGAAGCATACCTTGAGGAATCATATGATTCTCCACGCCAAGAAGAGACAGTACATCTGCGACATCTGCACCAAGACTTTCAAAACGAAGAGTCGGCTGGAGAGTCACGTGGCGGGCCACAACTCTGCCTTGGCCAACAAACTGTCGTACTGTCACGAGTGCCAAGTGCAGTACAAGAACATTTATGTGTATAGGAACCATCTCAGAAATAGCGCCAACCATTCCGAAAGGGCGTTCTCGTGTCCAGAGTGCAACAAAAAGTTCGCGTCCAAGGTGTACTGGACGAGGCACTACAACTTCTACCATTTGCGCAAGTCACAATATAACTGTGATACATGCAATAAGCTGTTCATATCAGAGTCGCGGCTTAAGAACCATCGCCAGATACACCACGGCCTGTCTCGCCCAAAGAACCACCCCTGCAACCTTTGTGGCAAGAAGTTTTTTTCTATCACAACACTACGGAACCACAAGCTGATCCACTCCGAGCAGAGGAGCTACATGTGCGAGGACTGTGGCGACACTTTCAAACAACGGCCGGCCCTCTACACACACGCCAAGCTGGTGCATGGCGACGGACGACGGAAATAG
- Protein Sequence
- MENNIVKEEEADTVEPAEVNAEITETAENTSHIYVDSTSDKEELYNDCKANDKMIVANNEIIKANDETVETSYETIEANDETIETNDENTLEINQTDAEMDEMDLNHKSSFVKRRNVVKRPKIDAELEKKFTKVELSAEEIIQHRENKRNHYNFKKIPFKCDSCVLGFTKKETLDKHMEKKHDESIGTHKCDICKVRFSSKLLVANHRMRHYYCYRCTLCKYETSELWSALNHCKMKHERDRLNSIHCTQCETVVKTAKELEEHMQLEHRLYCNECGVRFKGKHTLRNHMILHAKKRQYICDICTKTFKTKSRLESHVAGHNSALANKLSYCHECQVQYKNIYVYRNHLRNSANHSERAFSCPECNKKFASKVYWTRHYNFYHLRKSQYNCDTCNKLFISESRLKNHRQIHHGLSRPKNHPCNLCGKKFFSITTLRNHKLIHSEQRSYMCEDCGDTFKQRPALYTHAKLVHGDGRRK*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00824171;
- 90% Identity
- -
- 80% Identity
- -